View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_102 (Length: 351)
Name: NF9839A_low_102
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_102 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 52199438 - 52199773
Alignment:
| Q |
11 |
tggacatcaaaagaaaaccaaaattctaaaaacgtgttgcatgaaaaagggtgtggaaatataactcatttttatctatcttaaccagtgggcatgcaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52199438 |
tggacatcaaaagaaaaccaaaattctaaaaacgtgttgcatgaaaaagggtgtggaaatataactcatttttatctatcttaaccagtgggcatgcaga |
52199537 |
T |
|
| Q |
111 |
attcaaaacatcaaatgcaaaatggcatgaaagccaatgagaatgaaagtagatattcatattagtgagtaaggtagatattgaaatggatgatggtgtc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52199538 |
attcaaaacatcaaatgcaaaatggcatgaaagccaatgagaatgaaagtagatattcatattagtgagtaaggtagatatcgaaatggatgatggtgtc |
52199637 |
T |
|
| Q |
211 |
gactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgtacttaccactcccaccaatcactgcaact |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52199638 |
gactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgtacttaccactcccaccaatcactgcaact |
52199737 |
T |
|
| Q |
311 |
tcagatttcagcgatgctgtcctgtgaactccaaac |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
52199738 |
tcagatttcagcgatgctgtcctgtgaactccaaac |
52199773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 306
Target Start/End: Complemental strand, 6735433 - 6735309
Alignment:
| Q |
182 |
aggtagatattgaaatggatgatggtgtcgactccatccgtggtgtgctgatcctctttcagcagtgtctcaagagctgcatatccccttgcattctcgt |
281 |
Q |
| |
|
||||||||| ||||||| | ||||||||| | ||||| |||||||| || ||||| ||||| || |||||| || |||||||| || |||||||| | |
|
|
| T |
6735433 |
aggtagatactgaaatgcaagatggtgtcagccccatctgtggtgtgttggtcctccttcagtaggttctcaattgcagcatatcctctagcattctcat |
6735334 |
T |
|
| Q |
282 |
acttaccactcccaccaatcactgc |
306 |
Q |
| |
|
|||| ||| |||||||||||||||| |
|
|
| T |
6735333 |
acttcccagtcccaccaatcactgc |
6735309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University