View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_103 (Length: 351)
Name: NF9839A_low_103
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_103 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 339
Target Start/End: Complemental strand, 5188609 - 5188280
Alignment:
| Q |
7 |
tttcattcatcatgcaacacaacgacgcaagggtttgatgcagattccaaatcccttcctatacagtatatatgaattattttattcatcaaaatgacag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5188609 |
tttcattcatcatgcaacacaacgacgcaagggtttgatgcagattccaaatcccttc-tatacagtatatatgaattattttattcatcaaaatgacag |
5188511 |
T |
|
| Q |
107 |
ctacgnnnnnnnnnnggtacaaggaatattccgatgacataatattaactgacttggaatacttaattctcataaaaataagcatgctgaagtacgttgc |
206 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5188510 |
ctacgaaaaaaaaa-ggtacaaggaatattccgatgacataatattaattgacttggaatacttaattctcataaaaataagcatgctgaagtacgttgc |
5188412 |
T |
|
| Q |
207 |
cttgcatatgccatatagtatattcttttagcaaatagtagatgccaacaataatagtggagnnnnnnnnnnggaagaagaaagaaaaataatagtgaag |
306 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5188411 |
cttgcatatgccatatagtatatccttttagcaaatagtagatgccaacaataatagtggagttttttttttggaagaagaaagaaaaataatagtgaag |
5188312 |
T |
|
| Q |
307 |
ttatcgaatgggttggtcaccctctaagatatt |
339 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| |
|
|
| T |
5188311 |
ttatcgaat-ggttggtctccctctaagatatt |
5188280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University