View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_106 (Length: 349)
Name: NF9839A_low_106
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_106 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 89 - 347
Target Start/End: Complemental strand, 42387553 - 42387314
Alignment:
| Q |
89 |
agaccagattattaataacttgtttactgatggaatatttgctgttgctatcatattctacatcttttgaatttcatttagtgctttctaatatatgcta |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42387553 |
agaccagattattaataacttgtttactgatggaatatttgctgttgctatcatattctacatcttttgaatttcatttagtgctttctaatatatgcta |
42387454 |
T |
|
| Q |
189 |
ttggaaattctttagaatattgttacctgttgatttgtgataggtctgcagattaatcaataaatcttacaaaagagaatattctctctctttactgttg |
288 |
Q |
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| T |
42387453 |
ttggaaattctttagaatattgttacctgttgatttgtgataggtctgcagattaatcaataaat-------------------tctctctttactgttg |
42387373 |
T |
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| Q |
289 |
aattccatttttgttgatagcgttttccctcacatttttctgcgattctttgtctggtt |
347 |
Q |
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| T |
42387372 |
aattccatttttgttgatagcgttttccctcacatttttctgcgattctttgtctggtt |
42387314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 89 - 244
Target Start/End: Original strand, 3190603 - 3190758
Alignment:
| Q |
89 |
agaccagattattaataacttgtttactgatggaatatttgctgttgctatcatattctacatcttttgaatttcatttagtgctttctaatatatgcta |
188 |
Q |
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| T |
3190603 |
agaccagattattaataacttgtttactgatggaatatttgctgttgctatcatactctacatcttttgaatttcatttagtgctttctaatatatgcta |
3190702 |
T |
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| Q |
189 |
ttggaaattctttagaatattgttacctgttgatttgtgataggtctgcagattaa |
244 |
Q |
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| T |
3190703 |
ttggaaattctttagaatattgttacctgttgatttgggataggtctgcagattaa |
3190758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 2317036 - 2317103
Alignment:
| Q |
243 |
aatcaataaatcttacaaaaga-gaatattctctctctttactgttgaattccatttttgttgatagc |
309 |
Q |
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| T |
2317036 |
aatcaataactcttacaagagaagaatagtctctctctttacggttgaattccatttttgatgatagc |
2317103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 39076690 - 39076745
Alignment:
| Q |
255 |
ttacaaaagagaatattctctctctttactgttgaattccatttttgttgatagcg |
310 |
Q |
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| T |
39076690 |
ttacaagagagaatagtctctctctttactgttgaatttcatttttggtgatagcg |
39076745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 1752838 - 1752801
Alignment:
| Q |
242 |
taatcaataaatcttacaaaagagaatattctctctct |
279 |
Q |
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| T |
1752838 |
taatcaataaatcttacaaaagagaatagtctctctct |
1752801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 43414221 - 43414261
Alignment:
| Q |
247 |
aataaatcttacaaaagagaatattctctctctttactgtt |
287 |
Q |
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| T |
43414221 |
aataactcttacaaaagaaaatagtctctctctttactgtt |
43414261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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