View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_111 (Length: 344)
Name: NF9839A_low_111
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_111 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 330
Target Start/End: Original strand, 47680604 - 47680932
Alignment:
| Q |
9 |
agcatagaatgaaggacctacatgcagtgacagcaaggcatggggggctaccctaaag---------gatggaaaagacaggattcgaatttttaaacac |
99 |
Q |
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| T |
47680604 |
agcagagaatgaaggacctacatgcagtgacagcaaggcatggggggctaccctaaagaaaagcaaggatggaaaagacaggattcgaatttttaaacac |
47680703 |
T |
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| Q |
100 |
agaaaccaattgtgttgtgacaccctaaccacccatcatgtttgaaaaaccgagacacaaaccaattgcgtttattagggtttgactcaattcattgatg |
199 |
Q |
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| T |
47680704 |
agaaaccaattgtgttgtgacaccctaaccacccatcatgtttgaaaaaccgagacacaaaccaattgcgtttattagggtttgactcaattcattgatg |
47680803 |
T |
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| Q |
200 |
atcatcaatactatacaacaataatggattttttggcgatagtgtataatgtagctattactttgtacatccatgtatatttggtagtatatggtattgc |
299 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47680804 |
atcatcaatac--tacaacaataatggattttttggcgatagtgtataatgtagctattactttgtacatccatgtataattggtagtatatggtattgc |
47680901 |
T |
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| Q |
300 |
atttatatttggaattaatgatacatattat |
330 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
47680902 |
atttatatttggaattaatgatacatattat |
47680932 |
T |
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