View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_113 (Length: 343)
Name: NF9839A_low_113
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_113 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 28870784 - 28871091
Alignment:
| Q |
19 |
catcatctaatgtatgggatctgattctattactttccttctgaattgtttcattttgtactttcagattgttgagccattcactgctcattatgttttt |
118 |
Q |
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| T |
28870784 |
catcatctaatgtatgggatctgattctattactttccttctgaattgtttcattttgtactttcagattgttgagccattcactgctcattacgttttt |
28870883 |
T |
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| Q |
119 |
gcacttggcgtagcaagattcttaagctgtgctcattgggttcttcaggtctgttcataaattttttgagtcgtctttcccgttgatcaaggagtgggat |
218 |
Q |
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| T |
28870884 |
gcacttggcgtagcaagattcttaagctgtgctcattgggttcttcaggtctgttcataaattttttgagtcgtctttcccgttgatcaaggagtgggat |
28870983 |
T |
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| Q |
219 |
atgaacattatttgataaattttagtctttctttcattttcaatggtatagtatagctaagccatttttataggcaacatgtgctctaaagctcttgccg |
318 |
Q |
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| T |
28870984 |
atgaacattgtttgataaattttagtctttctttcattttcaatggtatagtatagctaagccatttttataggcaacatgtgctctaaagctcttgccg |
28871083 |
T |
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| Q |
319 |
ttttgtga |
326 |
Q |
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|||||||| |
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| T |
28871084 |
ttttgtga |
28871091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 53125047 - 53124952
Alignment:
| Q |
78 |
actttcagattgttgagccattcactgctcattatgtttttgcacttggcgtagcaagattcttaagctgtgctcattgggttcttcaggtctgtt |
173 |
Q |
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| T |
53125047 |
actttcagattgttgaaccattcacagcacactatgtttttgcccttggagttgcaaggttcttgagttgtgcacattgggttctgcaggtttgtt |
53124952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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