View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_117 (Length: 338)
Name: NF9839A_low_117
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_117 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 336
Target Start/End: Complemental strand, 51873981 - 51873653
Alignment:
| Q |
7 |
tttggtgttggccatctttgaagttcattttgatcttgaacttcatcatgaggagggtcatttatgagtagtttgggatcagaagttatgaggttggttt |
106 |
Q |
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| T |
51873981 |
tttggagttggccatctttgaagttcattttgatcttgaacttcatcatgaggagggtcatttatgagtagtttaggatcagaagttatgaggttggttt |
51873882 |
T |
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| Q |
107 |
gtgtgggacagagaaatggggatggcttaggtttacacatatctcactagcaagtagttttggatatgtacaaaggatagaatatacaagagctaccact |
206 |
Q |
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| T |
51873881 |
gtgtgggacagagaaatggggatggcttaggtttacacatatctcactagcaagtagttttggatatgtacaaaggatagaatatacaagagctaccact |
51873782 |
T |
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| Q |
207 |
gctcttgcttctagcttaggcttagtgatcgtggatggattgtgtttgaagctgtttgagaagatgtaagaggtttgtgtattttgtatgggaggaagat |
306 |
Q |
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| T |
51873781 |
gctcttgcttctagcttaggcttagtgatcgtggatggactgtgtttgaagctgtttgagaagatgtaagaggtttgtgtattttgtatgggaggaagat |
51873682 |
T |
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| Q |
307 |
gatgaaggtgagagatgtgtttatatgcat |
336 |
Q |
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| T |
51873681 |
gatgaaggtgagtg-tgtgtttttatgcat |
51873653 |
T |
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