View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_118 (Length: 336)

Name: NF9839A_low_118
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_118
NF9839A_low_118
[»] chr2 (25 HSPs)
chr2 (1-315)||(39215580-39215894)
chr2 (20-312)||(39161809-39162104)
chr2 (20-312)||(39207090-39207385)
chr2 (2-310)||(39388918-39389231)
chr2 (1-117)||(39370056-39370172)
chr2 (142-309)||(39192266-39192436)
chr2 (142-309)||(39197946-39198116)
chr2 (142-244)||(39222932-39223037)
chr2 (175-312)||(39370254-39370394)
chr2 (8-97)||(39192439-39192528)
chr2 (8-97)||(39198119-39198208)
chr2 (19-93)||(39468305-39468379)
chr2 (2-117)||(39414761-39414876)
chr2 (21-96)||(39459220-39459295)
chr2 (19-97)||(39381510-39381588)
chr2 (2-96)||(39473409-39473503)
chr2 (1-66)||(39137830-39137895)
chr2 (171-308)||(39381275-39381412)
chr2 (9-97)||(39222841-39222929)
chr2 (1-93)||(39397852-39397944)
chr2 (2-96)||(39421832-39421926)
chr2 (171-216)||(39421688-39421733)
chr2 (171-208)||(39468448-39468485)
chr2 (250-303)||(39223101-39223154)
chr2 (164-208)||(39459387-39459431)
[»] chr6 (2 HSPs)
chr6 (1-93)||(16113247-16113339)
chr6 (171-208)||(16113441-16113478)
[»] chr7 (2 HSPs)
chr7 (1-66)||(19807780-19807845)
chr7 (172-216)||(19807963-19808007)
[»] chr5 (2 HSPs)
chr5 (171-312)||(33561135-33561281)
chr5 (176-216)||(17059602-17059642)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 39215580 - 39215894
Alignment:
Q  1 gtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215580 gtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaag 39215679  T
Q  101 ttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaatgttcttattcatctagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215680 ttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaatgttcttattcatctagtt 39215779  T
Q  201 tattgaaagagtttcaatacaacggtccctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaat 300  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215780 tattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaat 39215879  T
Q  301 gttttatgtctttgt 315  Q
    |||||||||||||||    
T  39215880 gttttatgtctttgt 39215894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 39161809 - 39162104
Alignment:
Q  20 aaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaattcg 119  Q
    |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| ||||||||||||||||||||||| |||| |||| ||||| |    
T  39161809 aaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttg 39161908  T
Q  120 atttacgaccgacgaagcttgggtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttca 216  Q
    ||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| ||||||||||||| ||||||||| ||||||||||| ||| |    
T  39161909 atggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaatttta 39162008  T
Q  217 atacaacggtccctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctt 312  Q
     || ||| || ||| ||||||||||||| | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| ||||||||    
T  39162009 ttataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtctt 39162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 39207385 - 39207090
Alignment:
Q  20 aaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaattcg 119  Q
    |||||| ||||| |||||||| | |  |||||| |||| |||||||| ||||| |||| ||||||||||||||||||||||| |||| |||| ||||| |    
T  39207385 aaagagtataagctcaaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttg 39207286  T
Q  120 atttacgaccgacgaagcttgggtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttca 216  Q
    ||  || ||  | | ||| || ||||||||||||||||||||| ||   || | |||| ||||||||||||| ||||||||| ||||||||||| ||| |    
T  39207285 atggacaactaaaggagcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaatttta 39207186  T
Q  217 atacaacggtccctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctt 312  Q
     || ||| || ||| ||||||||||||| | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| ||||||||    
T  39207185 ttataactgttccttttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtctt 39207090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 310
Target Start/End: Complemental strand, 39389231 - 39388918
Alignment:
Q  2 tggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagt 101  Q
    ||||| ||||| ||||| |||||| |||||||||||||| |||| |||||| |||| |||||||| |||||||||| ||| |||||||| |||||| |||    
T  39389231 tggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaaggagctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagt 39389132  T
Q  102 taaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctag 198  Q
     |||| |||| ||||| |||  || |   | | |||  | |||||||||||||||| ||||    |||| | |||| |||||||||||||||||||| ||    
T  39389131 caaagctgaataaatttgatggacaaataaaggagcccgagtcaaggaaaaaatattttgatggggaaaaagaatccggtaaatgttcttattcatccag 39389032  T
Q  199 tttattgaaagagtttcaatacaacggtccctcttaatgatgatgaca--atttttataacccgatctacatagttgtttaaaaatatttttaatcatgt 296  Q
    |||||||||||| |||   |||||| || ||||||||||||||||| |   |||||||| |  ||||||| || ||   || |||  |||||||||||||    
T  39389031 tttattgaaagaatttttttacaactgttcctcttaatgatgatgatattttttttatagcttgatctacttaattccatagaaacgtttttaatcatgt 39388932  T
Q  297 taatgttttatgtc 310  Q
    ||||||| ||||||    
T  39388931 taatgttgtatgtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 39370056 - 39370172
Alignment:
Q  1 gtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaag 100  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||| | ||||||||||||||||||||| |||||||||||| || | ||    
T  39370056 gtggaaagaacttgagttaaaagagaacaagttcatagtgcaggtgaaggagttcgaattaaaagagaagcagtttggaagacaagtcaagggtcttgag 39370155  T
Q  101 ttaaagttgaaaaaatt 117  Q
    | |||| |||| |||||    
T  39370156 tcaaagatgaataaatt 39370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 142 - 309
Target Start/End: Complemental strand, 39192436 - 39192266
Alignment:
Q  142 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggtccctcttaatga 238  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  | |||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  239 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 309  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 142 - 309
Target Start/End: Complemental strand, 39198116 - 39197946
Alignment:
Q  142 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggtccctcttaatga 238  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  | |||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  239 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 309  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  142 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggtccctcttaatga 238  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| || |||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  239 tgatga 244  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 39370254 - 39370394
Alignment:
Q  175 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggtccctcttaatgatgatgacaat---ttttataacccgatctacatagt 271  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  || || ||||||||||||||  ||   ||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  272 tgtttaaaaatatttttaatcatgttaatgttttatgtctt 312  Q
    | | |||||| ||| ||||||||||||||||| ||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtctt 39370394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 39192528 - 39192439
Alignment:
Q  8 gaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 97  Q
    |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| ||||| |||||||||||||    
T  39192528 gaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 39198208 - 39198119
Alignment:
Q  8 gaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 97  Q
    |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| |||||||||| ||||| |||||||||||||    
T  39198208 gaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttgaaggactagtcaaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 39468305 - 39468379
Alignment:
Q  19 aaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaagga 93  Q
    ||||||||||  |||||||||| |||| ||||||||||||||||||||||||||| ||| |||||||||||||||    
T  39468305 aaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattgaaggacaagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 39414876 - 39414761
Alignment:
Q  2 tggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagt 101  Q
    |||||||||||  ||  ||| ||||||||||||||| ||| ||| || ||| |||||||||| ||||| ||||||| ||||||||| ||||||||| |||    
T  39414876 tggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaatgagaaacagtttgaaggacaagttaaggatcctgagt 39414777  T
Q  102 taaagttgaaaaaatt 117  Q
     |||| || |||||||    
T  39414776 caaagctggaaaaatt 39414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 39459220 - 39459295
Alignment:
Q  21 aagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 96  Q
    |||||||||||||||||||||  || || ||| ||||||||||||| ||||| |||| ||||||||||||||||||    
T  39459220 aagagaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttgaaggacaagtcaaggatcc 39459295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 39381588 - 39381510
Alignment:
Q  19 aaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 97  Q
    |||||||||| ||||||||||| || | || ||| |||||||||||||||||||||||| | |||||| ||||||||||    
T  39381588 aaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaagacaagacaaggatcct 39381510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 39473503 - 39473409
Alignment:
Q  2 tggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 96  Q
    ||||||||||| |||| |||||||||||||||||||||||  || |||    |||||||||||||||||||| ||| |||| ||||| |||||||    
T  39473503 tggaaagaactcgagtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcc 39473409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39137830 - 39137895
Alignment:
Q  1 gtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 66  Q
    |||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  39137830 gtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 39137895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 171 - 308
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  171 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggtccctcttaatgatgatgacaatttttataacccgatctacatag 270  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||  || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  271 ttgtttaaaaatatttttaatcatgttaatgttttatg 308  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 39222841 - 39222929
Alignment:
Q  9 aacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 97  Q
    ||||||||| | |||||||||||||||||| | |||| |||||| |||| || ||||| |||  ||||| |||||||||||||||||||    
T  39222841 aacttgagtcagaagagaataagttcaaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaaggacaagtcaaggatcct 39222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 39397944 - 39397852
Alignment:
Q  1 gtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaagga 93  Q
    ||||||| ||||||||| |||||||||| ||||||||||| ||||  ||||| |  ||||||||||||||||| ||| ||| | |||||||||    
T  39397944 gtggaaaaaacttgagtcaaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcaggttgcaggtcgagtcaagga 39397852  T

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Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 96
Target Start/End: Complemental strand, 39421926 - 39421832
Alignment:
Q  2 tggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 96  Q
    |||||||||||  ||| |||||||||||||||||||||||  || || ||| |||| |||||||| ||||  ||||||| || ||||||||||||    
T  39421926 tggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggagcactagtcaaggatcc 39421832  T

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Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  171 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 216  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

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Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  171 aatcgggtaaatgttcttattcatctagtttattgaaa 208  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  250 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 303  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  164 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 208  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 16113247 - 16113339
Alignment:
Q  1 gtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaagga 93  Q
    |||||||||||| || | |||||||||| ||||||||||| |||  |||||| |||||||||||||||||||| ||| || ||||||||||||    
T  16113247 gtggaaagaactcgaatcaaaagagaatcagttcaaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtacaagtcaagga 16113339  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  171 aatcgggtaaatgttcttattcatctagtttattgaaa 208  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 19807780 - 19807845
Alignment:
Q  1 gtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 66  Q
    |||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  19807780 gtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 19807845  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 19807963 - 19808007
Alignment:
Q  172 atcgggtaaatgttcttattcatctagtttattgaaagagtttca 216  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttca 19808007  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 312
Target Start/End: Original strand, 33561135 - 33561281
Alignment:
Q  171 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggtccctcttaatgatgatgacaattt----ttataacccgatctac 266  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  || ||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  267 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctt 312  Q
     || |  |||||| | |||||||||||||||||||||| ||||||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtctt 33561281  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  176 ggtaaatgttcttattcatctagtttattgaaagagtttca 216  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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