View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_12 (Length: 486)
Name: NF9839A_low_12
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 37373309 - 37373034
Alignment:
| Q |
19 |
acatcaatgttgtagatctcgaagtattgatattttggtcacatttgtcacttttgtggctattgtgttattgtatgatattaattttgatgttgtgagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37373309 |
acatcaatgttgtagatctcgaagtattgatattttggtcacatttgtcacttttgtggctattgtgttattgtatgatattaattttgatgttgtgagc |
37373210 |
T |
|
| Q |
119 |
ttatctatggaccattcttttcatgtcaacaaattcttcataataaataacattttcaaagaaaatagtggaaataaaattcccttgaaggtggaaataa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37373209 |
ttatctatggaccattcttttcatgtcaacaaattcttcataataaataacattttcaaagaaaatagtggaaataaaattcccttgaaggtggaaataa |
37373110 |
T |
|
| Q |
219 |
atctacgtgtaaactgttgataaacatttctcttaaagtaacttataagaataatatgaagtaaatgttaatcaag |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
37373109 |
atctacgtgtaaactgttgataaacatttctcttaatgtaactcatcagaataatatggagtaaatgttaatcaag |
37373034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 37372951 - 37372905
Alignment:
| Q |
369 |
tcctttatgtttagtttttctatccatgccaacaatcaattatcaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37372951 |
tcctttatgtttagtttttctatccatgccaacaatcaattatcaaa |
37372905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 486
Target Start/End: Complemental strand, 37372435 - 37372356
Alignment:
| Q |
407 |
attatcaaatttcattctattaagtgagcttgtttacataattcaaatgccactctaatattatttcatctatcacatca |
486 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||| | |||||| |||| ||||||||| |||| |||||||||| |
|
|
| T |
37372435 |
attatcaaattttattctattaagtgagattggttacatgaatcaaataacactataatattatgtcatatatcacatca |
37372356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University