View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_120 (Length: 331)
Name: NF9839A_low_120
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_120 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 27 - 331
Target Start/End: Original strand, 40660501 - 40660806
Alignment:
| Q |
27 |
accaaaccaaaccaaatattgagctaaatccagaataatctgcacttctatttccccttgagtaacttgctcgaaatcaaataacaaagacaaccacaat |
126 |
Q |
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| T |
40660501 |
accaaaccaaaccaaatattgagctaaatccagaataatctgcacttctatttccccttgagtaacttgctcgaaatcaaataacaaagacaaccacaat |
40660600 |
T |
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| Q |
127 |
caagtagacaaaaagtagcagactggcctcattaacatgtgcttcatgcttaattgcaatcataacaaatgtacatgatgtctattgtataacaaaccgg |
226 |
Q |
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| T |
40660601 |
caagtggacaaaaagtagcagactggcctcattaacatgtgcttcatgcttaattgcaatcataacaaatgtacatgatgtctattgtataaaaaaccgg |
40660700 |
T |
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| Q |
227 |
aggtagtagtaaaaaactagcgcgtaatctataactcctatatctctaagatgttgatcttggttatggctgctgccttttc-attacttcctatttctt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
40660701 |
aggtagtagtaaaaaactagcgcgtaatctataactcctatatctctaagatgttgatcttggttatggctgctgccttttctattgcttcctatttctt |
40660800 |
T |
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| Q |
326 |
ctgtga |
331 |
Q |
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|||||| |
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| T |
40660801 |
ctgtga |
40660806 |
T |
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