View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_123 (Length: 328)
Name: NF9839A_low_123
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_123 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
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|
| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 11780115 - 11780426
Alignment:
| Q |
18 |
acatcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacat |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
11780115 |
acatcatcgtgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagctcctgtgggcgcgaatgattatgttccacat |
11780214 |
T |
|
| Q |
118 |
catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
11780215 |
catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgcttcactctctcagaatgcatttcatc |
11780314 |
T |
|
| Q |
218 |
atgcaa-ccgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgt |
316 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11780315 |
atgcaatcggggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaacgctgtcaaacacgttatgtagtggaaagctgaaagatgt |
11780414 |
T |
|
| Q |
317 |
tgacgacaatga |
328 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11780415 |
tgacgacaatga |
11780426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 211
Target Start/End: Original strand, 10424593 - 10424765
Alignment:
| Q |
39 |
gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
138 |
Q |
| |
|
||||||||||||||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || | |
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|
| T |
10424593 |
gatgaatgtggtacacgctcgtaggaacccttaggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagaga |
10424692 |
T |
|
| Q |
139 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
211 |
Q |
| |
|
|||| || || || |||||||||| |||||||||||||| ||||| | || |||||||||||||||||||| |
|
|
| T |
10424693 |
catcatccaccacggggttctccaatacctcccgcgatgtcagatgcaattgttccactctctcagaatgcac |
10424765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 1624838 - 1625008
Alignment:
| Q |
39 |
gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
138 |
Q |
| |
|
||||||||||||||| |||| |||| |||||| |||||||| ||||| ||| | |||| |||| ||| |||||||||||||| | ||||| ||| | |
|
|
| T |
1624838 |
gatgaatgtggtacacgctcgtgggaacccttgggactctcgaccagctcccgcgggctcgaactattgtgttccacatcatcataaagcgtaacagtga |
1624937 |
T |
|
| Q |
139 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgc |
209 |
Q |
| |
|
|||| || || ||||| ||||| |||||||||||||| ||||| |||| || ||||||||| ||||| |
|
|
| T |
1624938 |
catcatccaccgtggggttccccaacacctcccgcgatgtcagatgcaactgttctactctctcaaaatgc |
1625008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 30731537 - 30731478
Alignment:
| Q |
63 |
gcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatcc |
122 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| | ||||| |||||||||| ||||| |
|
|
| T |
30731537 |
gcacccttgggactctccaccagctcctgtgggctcacatgatcatgttccacaccatcc |
30731478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 27 - 328
Target Start/End: Original strand, 17158540 - 17158845
Alignment:
| Q |
27 |
tgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgaga |
126 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| | ||||| ||||||||||||| | || ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
17158540 |
tgcttaacaattgatgaatgtagtacatgctcatggtcccccttgggactctccaccaactactaggggtgcgaatgattatgctccacatcatccgaga |
17158639 |
T |
|
| Q |
127 |
gcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctcc-actctctcagaatgcacttcatcatgc---a |
222 |
Q |
| |
|
| || | ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||| | |
|
|
| T |
17158640 |
gtgtcgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcggatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaa |
17158739 |
T |
|
| Q |
223 |
accgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacga |
322 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
17158740 |
actaggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacga |
17158839 |
T |
|
| Q |
323 |
caatga |
328 |
Q |
| |
|
|||||| |
|
|
| T |
17158840 |
caatga |
17158845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 21 - 328
Target Start/End: Complemental strand, 12102070 - 12101765
Alignment:
| Q |
21 |
tcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgat----tatgttccaca |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| | ||||||||||||| ||||||||||| |
|
|
| T |
12102070 |
tcatcgtgctcaacaattgatgaatgtggtacatgctcataggcacccttgggactctccaccagctcccgggggcgcgaatgattatatatgttccaca |
12101971 |
T |
|
| Q |
117 |
tcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcat |
216 |
Q |
| |
|
| | | | ||||||||||||| | | ||||||||||||||||||||||||||| ||| | |||||| ||||||||| |||||| |||| |
|
|
| T |
12101970 |
t---------gtatcgtagtaacatcgtcagccatggggttctccaactcctcccgcgatgtcgaatgtgtttgctccgctctctcaggatgcacgtcat |
12101880 |
T |
|
| Q |
217 |
catgc---aaccgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaaga |
313 |
Q |
| |
|
| ||| | |||||| ||||||||||||| | || ||| || | |||||||| |||||||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
12101879 |
cgtgcacaattggggaaataatttcaaacactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaagctgaaaga |
12101780 |
T |
|
| Q |
314 |
tgttgacgacaatga |
328 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12101779 |
tgttgacgacaatga |
12101765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 325
Target Start/End: Complemental strand, 14977814 - 14977507
Alignment:
| Q |
21 |
tcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcat |
120 |
Q |
| |
|
||||| |||| |||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| ||| | ||| ||||||||||||||||||||||| |
|
|
| T |
14977814 |
tcatcatgctaaacaatggatgaatgtggaacatgctcatgggaacccttgggactctccaccagctcccgcggggtcgaatgattatgttccacatcat |
14977715 |
T |
|
| Q |
121 |
ccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat- |
219 |
Q |
| |
|
|| ||||| | ||||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |
|
|
| T |
14977714 |
aagatagcgtagcagtaacatcgtcaaccgttgggatctgcacctcctcccgcgatgtcggatgcgactgctccactctctcggaatgcacgtcatcgtg |
14977615 |
T |
|
| Q |
220 |
-gcaac-cgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgtt |
317 |
Q |
| |
|
||||| |||| |||| |||| |||||| |||||| | ||| || |||||||||||| | ||||||| ||| || | ||| ||||| ||||||||| |
|
|
| T |
14977614 |
cgcaactggggacacaaactcaatcactggtgtagcttctggcaacttctcactagaaatactatcaaacatgttgtgtaatgggaagctaaaagatgtt |
14977515 |
T |
|
| Q |
318 |
gacgacaa |
325 |
Q |
| |
|
|| ||||| |
|
|
| T |
14977514 |
gatgacaa |
14977507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 325
Target Start/End: Original strand, 11776308 - 11776482
Alignment:
| Q |
154 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatg--caac-cgggaaacaatttcaaacactggcgt |
250 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||| || |||| ||||||||| || |||||||| || |
|
|
| T |
11776308 |
ggttctccaactcctcccgcgatgactgatgcaactgctccactctctcagaatgcacatcatcgtgcacaacaggggaaacaacctctaacactggtgt |
11776407 |
T |
|
| Q |
251 |
agctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
325 |
Q |
| |
|
| | || ||| ||||||| |||||| ||||||||| | ||||| | ||||||||||||||| |||||||||| |
|
|
| T |
11776408 |
aacatgtggcaactcctcatgagaaattttgtcaaacgcattatgtaatggaaagctgaaagagtttgacgacaa |
11776482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 9352421 - 9352477
Alignment:
| Q |
154 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgca |
210 |
Q |
| |
|
||||||||||| |||| ||||||||| || || |||| ||||||||||||||||||| |
|
|
| T |
9352421 |
ggttctccaacacctctcgcgatgtcagacgcaactgttccactctctcagaatgca |
9352477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 24353638 - 24353686
Alignment:
| Q |
154 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctc |
202 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||| | ||||||| |
|
|
| T |
24353638 |
ggttctccaactcctcccgcgatgtctgatgcaactgcttcgctctctc |
24353686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 39 - 325
Target Start/End: Original strand, 5781902 - 5782191
Alignment:
| Q |
39 |
gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
138 |
Q |
| |
|
|||||| ||| |||| ||||||||| |||||| |||||||||||||| ||| | ||| ||||||||| |||||||||||||| || || || ||||| |
|
|
| T |
5781902 |
gatgaacgtgatacacgctcatgggaacccttgggactctccaccagctcccgcgggatcgaatgattgtgttccacatcatcagaaagtgtaacagtaa |
5782001 |
T |
|
| Q |
139 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat--gcaac-cgggaaacaat |
235 |
Q |
| |
|
|||| || || |||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| ||||| | ||||| ||||||||| |
|
|
| T |
5782002 |
catcatccaccgtgtggttctccaactccttccgcgatgtctgatgcaactgctcctctctctcagaatgcacgtcatcgtgcgcaacaagggaaacaac |
5782101 |
T |
|
| Q |
236 |
ttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
325 |
Q |
| |
|
|| |||||||||||||| | ||||||||||| |||||| | | ||||| || || | ||||||||||||||| |||||||||| |
|
|
| T |
5782102 |
ctctaacactggcgtagcacatggcagctcctcaggagaaattctattgaacacattgtgtaatggaaagctgaaagagtttgacgacaa |
5782191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 39 - 325
Target Start/End: Original strand, 19069420 - 19069709
Alignment:
| Q |
39 |
gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa |
138 |
Q |
| |
|
|||||||||| || | |||||||| |||||| |||||||||||||| ||||| ||| ||||||||| ||||||||||||| || || || ||||| |
|
|
| T |
19069420 |
gatgaatgtgatatacgctcatggaaacccttgggactctccaccagctcctgcgggatcgaatgattgtgttccacatcattagaaagggtaacagtaa |
19069519 |
T |
|
| Q |
139 |
catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat--gcaac-cgggaaacaat |
235 |
Q |
| |
|
|||| || || |||||||||||||||| ||||||||| ||||| || ||||| |||||||||||||||| ||||| | ||||| |||||| || |
|
|
| T |
19069520 |
catcttccaccgtggggttctccaactcctctcgcgatgtctgatgcaaccgctcctctctctcagaatgcacgtcatcgtgcgcaacaggggaaataac |
19069619 |
T |
|
| Q |
236 |
ttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa |
325 |
Q |
| |
|
|| |||||||||||||| || ||||||||| | |||||| ||||||||| | || || | ||||||||||||||| |||||||||| |
|
|
| T |
19069620 |
ctctaacactggcgtagcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa |
19069709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 17764060 - 17763963
Alignment:
| Q |
51 |
acatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaac |
148 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| ||| | || |||||||||||||||||||||| || ||||| | ||||||||| ||||| |
|
|
| T |
17764060 |
acatgctcatgggaacccttgagactctccaccagctcccgccagcttaaatgattatgttccacatcatcagaaagcgtagcagtaacatcatcaac |
17763963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 11724758 - 11724701
Alignment:
| Q |
154 |
ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
211 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| | ||||| |||||| ||||||||| |
|
|
| T |
11724758 |
ggttctccaacacctcccgcgatgtcagatgcaattgctctgctctcttagaatgcac |
11724701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 16311799 - 16311632
Alignment:
| Q |
44 |
atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg |
143 |
Q |
| |
|
||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| |
|
|
| T |
16311799 |
atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca |
16311700 |
T |
|
| Q |
144 |
tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
211 |
Q |
| |
|
|| || || ||||||||||| |||||||||||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
16311699 |
tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac |
16311632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 18488583 - 18488416
Alignment:
| Q |
44 |
atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg |
143 |
Q |
| |
|
||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| |
|
|
| T |
18488583 |
atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca |
18488484 |
T |
|
| Q |
144 |
tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
211 |
Q |
| |
|
|| || || ||||||||||| |||||||||||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
18488483 |
tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac |
18488416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 211
Target Start/End: Complemental strand, 18492793 - 18492626
Alignment:
| Q |
44 |
atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg |
143 |
Q |
| |
|
||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| |
|
|
| T |
18492793 |
atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca |
18492694 |
T |
|
| Q |
144 |
tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
211 |
Q |
| |
|
|| || || ||||||||||| |||||||||||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
18492693 |
tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac |
18492626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 19829018 - 19829181
Alignment:
| Q |
59 |
atgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttc |
158 |
Q |
| |
|
||||| |||||| |||||||||||||| ||| | ||| ||||||||| |||||||||||||| || || || ||||||||||| ||| ||||| |
|
|
| T |
19829018 |
atgggaacccttgggactctccaccagctcccgcgggttcgaatgattgtgttccacatcatcagaaagtgtaacagtaacatcgttcactgtggggttc |
19829117 |
T |
|
| Q |
159 |
tccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatgca |
222 |
Q |
| |
|
||||||||| || | |||||| | ||| || ||||| |||||||||||||||| ||||| |||| |
|
|
| T |
19829118 |
tccaactccccctgtgatgtctggtgcaaccgctcctctctctcagaatgcacgtcatcgtgca |
19829181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 16314161 - 16314023
Alignment:
| Q |
73 |
gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg |
172 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| || || || ||||||||||| ||||||| |
|
|
| T |
16314161 |
gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg |
16314062 |
T |
|
| Q |
173 |
cgatgtcggatgcgactgctccactctctcagaatgcac |
211 |
Q |
| |
|
|||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
16314061 |
tgatgtcagatgcaattgttccactttctcaaaatgcac |
16314023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 18495155 - 18495017
Alignment:
| Q |
73 |
gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg |
172 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||| |||||||||||| || ||||| || ||||| || || || ||||||||||| ||||||| |
|
|
| T |
18495155 |
gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg |
18495056 |
T |
|
| Q |
173 |
cgatgtcggatgcgactgctccactctctcagaatgcac |
211 |
Q |
| |
|
|||||| ||||| | || |||||| ||||| ||||||| |
|
|
| T |
18495055 |
tgatgtcagatgcaattgttccactttctcaaaatgcac |
18495017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 17459587 - 17459431
Alignment:
| Q |
55 |
gctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatg |
154 |
Q |
| |
|
||||||||| ||| || |||||||||||| ||| | |||| ||||||||| ||||||||||||| || ||||| ||| |||||||| |||| | |
|
|
| T |
17459587 |
gctcatggggaccgttgagactctccaccatctcccgcgggctcgaatgattgtgttccacatcattagaaagcgtaacagtgacatcgtccactatggg |
17459488 |
T |
|
| Q |
155 |
gttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac |
211 |
Q |
| |
|
||||||||||| |||||||||||||||||| | ||||| ||||||| |||||||| |
|
|
| T |
17459487 |
gttctccaacttttcccgcgatgtcggatgcaattgctctgctctctcggaatgcac |
17459431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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