View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_124 (Length: 328)
Name: NF9839A_low_124
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_124 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 30778442 - 30778754
Alignment:
| Q |
1 |
tcaaaggctatgttgttaattttcgattgtaaccatctaaaagaagaaaacttcacgatgttcaccggttgctgtatcgattgatctatatgtcgaaaaa |
100 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
30778442 |
tcaaaagctaagttgttaattttcggttgtaaccatctaaaagaagaaaatttcacgatattcaccggttgttgtatcgattg-tctatatgtcgaaaaa |
30778540 |
T |
|
| Q |
101 |
tacgactattcttgtccttccaaac-tcttaaacaaccgacaactaaatcacatggagacgtcttcttccacggttaccctagcctatcaatcccccatg |
199 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |
|
|
| T |
30778541 |
tacgactattcttatccttccaaatatcttaaacaaccgacaactaaatcacatggagacgtcttcttccaccgctatcctagcctatcaatcccccatg |
30778640 |
T |
|
| Q |
200 |
ctagcctcctaaactccacaaaggtaacatctttatcaaacgtaaatcaaaaagacgccaaaacctaacccacaaacttgcaccatgcagtcaaagatca |
299 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
30778641 |
ctagcctcctaatctccactaaggtaacacctttatcaaacgtaaatcaaaaggacgccaaaacctaacccacaaaccttcaccatgcagtcaaagatca |
30778740 |
T |
|
| Q |
300 |
caccaaaatgatgt |
313 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30778741 |
caccaaaatgatgt |
30778754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University