View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_125 (Length: 326)
Name: NF9839A_low_125
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_125 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 4355880 - 4356196
Alignment:
| Q |
1 |
ttagaggtggccataccatgactaacatgggcatatttaattggggtaaggtgtcaagctcgaaacgatctatttgtttggtgaaagtaagaaagtcagt |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4355880 |
ttagaggttgccataccatgactaacatgggcatatttaattggggtaaggtgtcaagctcgaaacgatctatttgtttggtgaaagtaagaaagtcagt |
4355979 |
T |
|
| Q |
101 |
ttttactgtttggtatttgaaagattatgagtcgagttcatggcagaaagtgttgaaagttagagtgagaggactaggattacaagagaaaaatcctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4355980 |
ttttactgtttggtatttgaaagattatgagtcgagttcatggcagaaagtgttgaaagttagagtgagaggactaggattacaagagaaaaatcctcaa |
4356079 |
T |
|
| Q |
201 |
gttaccgggtttacagttacaaatggagatctcttggtttttgctactgaagaaaaagtttatagttgtggtttgaatgaagaaagatttatgatggtag |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4356080 |
gttaccgggtttacagttacaaatggagatatcttggtttttgctactgaagaaaaagtttatagttgtggtttgaatgaagaaagatttatgatggtcg |
4356179 |
T |
|
| Q |
301 |
aggaaatagggcaacac |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
4356180 |
aggaaatagggcaacac |
4356196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 4675032 - 4674716
Alignment:
| Q |
1 |
ttagaggtggccataccatgactaacatgggcatatttaattggggtaaggtgtcaagctcgaaacgatctatttgtttggtgaaagtaagaaagtcagt |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4675032 |
ttagaggttgccataccatgactaacatgggcatatttaattggggtaaggtgtcaagctcgaaacgatctatttgtttggtgaaagtaagaaagtcagt |
4674933 |
T |
|
| Q |
101 |
ttttactgtttggtatttgaaagattatgagtcgagttcatggcagaaagtgttgaaagttagagtgagaggactaggattacaagagaaaaatcctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4674932 |
ttttactgtttggtatttgaaagattatgagtcgagttcatggcagaaagtgttgaaagttagagtgagaggactaggattacaagagaaaaatcctcaa |
4674833 |
T |
|
| Q |
201 |
gttaccgggtttacagttacaaatggagatctcttggtttttgctactgaagaaaaagtttatagttgtggtttgaatgaagaaagatttatgatggtag |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4674832 |
gttaccgggtttacagttacaaatggagatatcttggtttttgctactgaagaaaaagtttatagttgtggtttgaatgaagaaagatttatgatggtcg |
4674733 |
T |
|
| Q |
301 |
aggaaatagggcaacac |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
4674732 |
aggaaatagggcaacac |
4674716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 72 - 275
Target Start/End: Original strand, 38249535 - 38249738
Alignment:
| Q |
72 |
atttgtttggtgaaagtaagaaagtcagtttttactgtttggtatttgaaagattatgagtcgagttcatggcagaaagtgttgaaagttagagtgagag |
171 |
Q |
| |
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||||||||||||||| |||| ||||| ||||||||| ||||| ||| ||||| |||||||| |||||||||| ||||| |||||||| ||||| |||| |
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| T |
38249535 |
atttgtttggtgaaattaagtaagtctgtttttactatttgggttttaaaagactatgagtcaggttcatggcaaaaagtattgaaagtgagagtaagag |
38249634 |
T |
|
| Q |
172 |
gactaggattacaagagaaaaatcctcaagttaccgggtttacagttacaaatggagatctcttggtttttgctactgaagaaaaagtttatagttgtgg |
271 |
Q |
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| | ||||| | |||||| ||||| | |||| ||||||| |||| || || ||||| || |||||||||| |||||||| ||||| ||||| || |
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| T |
38249635 |
cattgggattgaaggagaaagatcctaatgttagagggtttatggttatgaacggtgatcttttaatttttgctacagaagaaaaggtttacagttgcgg |
38249734 |
T |
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| Q |
272 |
tttg |
275 |
Q |
| |
|
|||| |
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|
| T |
38249735 |
tttg |
38249738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 12036860 - 12036924
Alignment:
| Q |
69 |
tctatttgtttggtgaaagtaagaaagtcagtttttactgtttggtatttgaaagattatgagtc |
133 |
Q |
| |
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|||||||||||||||||| ||||||| | ||||| |||||||||| ||| ||||| |||||||| |
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| T |
12036860 |
tctatttgtttggtgaaattaagaaattttgttttcactgtttggtttttaaaagactatgagtc |
12036924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 20657177 - 20657241
Alignment:
| Q |
69 |
tctatttgtttggtgaaagtaagaaagtcagtttttactgtttggtatttgaaagattatgagtc |
133 |
Q |
| |
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|||||||||||||||||| ||||||| | ||||| |||||||||| ||| ||||| |||||||| |
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| T |
20657177 |
tctatttgtttggtgaaattaagaaattatgttttcactgtttggtttttaaaagactatgagtc |
20657241 |
T |
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