View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_127 (Length: 324)
Name: NF9839A_low_127
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_127 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 51669936 - 51669635
Alignment:
| Q |
7 |
ccaattcaaggatcacgggtcaaatattcccccacaggtaccacattatcccttggaatgtaaacaaaacttacgcctctcaatttatttatgagtataa |
106 |
Q |
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| T |
51669936 |
ccaattcaaggatcacgggtcaaatattcccccataggtaccacattataccttggaatgtaaacaaaaattacgcctctcaatttat----gagtataa |
51669841 |
T |
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| Q |
107 |
aaattggatttaaattaaaggatataaacagtcagtgtaaaacagatagattttcactgacgtctgatgaaaattcactattttgccacatcactcaact |
206 |
Q |
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| T |
51669840 |
aaattggatttaaattaaaggatataaacagtcagtgtaaaacagacagattttcactgacgtctgatgaaaattcactattttgccacatcactcaact |
51669741 |
T |
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| Q |
207 |
attataagggtattttcaaataagtagtatgacatgaaaaaatggtggtttctcactggatggcagtgtaaaa-tattttaccttaacagtgtatgtccg |
305 |
Q |
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| T |
51669740 |
attataagggtattttcaaataagtagtatgacatgaaaaaatggtggtttctcactggatgtcagtgtaaaattattttaccctaacagtgtatgtcca |
51669641 |
T |
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| Q |
306 |
ttgaac |
311 |
Q |
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| T |
51669640 |
ttgaac |
51669635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 13133170 - 13133245
Alignment:
| Q |
173 |
atgaaaattcactattttgccacatcactcaactattataagggtattttcaaataagtagtatgacatgaaaaaa |
248 |
Q |
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| T |
13133170 |
atgaaaatccactattttgccacatcaccccacttttgtaagggtattttgaaattggtggtatgacatggaaaaa |
13133245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 13458493 - 13458566
Alignment:
| Q |
188 |
tttgccacatcactcaactattataagggtattttcaaataagtagtatgacatgaaaaaatggtggtttctca |
261 |
Q |
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| T |
13458493 |
tttgccacatcaccccacttttgtaaaggtattttgaaattggtggtatgacatggaaaaatggtggtctctca |
13458566 |
T |
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