View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_128 (Length: 323)
Name: NF9839A_low_128
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_128 |
 | |
|
| [»] scaffold0159 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0380 (1 HSPs) |
| | |
|
| [»] scaffold1345 (1 HSPs) |
| | |
|
| [»] scaffold0114 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 282059 - 281813
Alignment:
| Q |
9 |
aatgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgtta |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
282059 |
aatgagattgacatcacagttacatccaaaatctcaagacattatgagtcatctcactaatatgttgttcaatatatattatatggaattcaatgtgtta |
281960 |
T |
|
| Q |
109 |
ttttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
281959 |
ttttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacacagcacttccgctccacaaaaatgt |
281860 |
T |
|
| Q |
209 |
tgaagcgtatatgatatcaccattgggacttacgtgggagacaacac |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
281859 |
tgaagcgtatatgatatcaccattgggacttacgggggagacaacac |
281813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 49952974 - 49953272
Alignment:
| Q |
11 |
tgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttatt |
110 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| | |||||||| |||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
49952974 |
tgagattgacataacagttacatccaaaatcttatgacattataagtcatctcacttatatattgttcaatatctattatatgccattcaatgtgttatt |
49953073 |
T |
|
| Q |
111 |
ttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttg |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
49953074 |
ttaatccacacttgacacattaacatctctcaattaaatatgagactcttcgtgtccgtgatccaccaccacgaagcacttccgctccccaaaaatgttg |
49953173 |
T |
|
| Q |
211 |
aagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcg-aacattgtagaaaaaacaaccacacaagtgagaatgatgtc |
308 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49953174 |
aagcgtatatgatatcaccgttgggacttacgggggagacaacacttgtgtgattcgaaacattgcagaaaaaacaaccacacaagtgagaatgatgtc |
49953272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 39974981 - 39974683
Alignment:
| Q |
11 |
tgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttatt |
110 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||| |||||||||||| |||||||||||| |||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
39974981 |
tgagattgacatcacagttacattcaaaatcttaagagattatgagtcattccactgatatgttattcaatatctattatatggcattcaatatgttatt |
39974882 |
T |
|
| Q |
111 |
ttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttg |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
39974881 |
ttaacccacacttgacacattaccatctctcaattaaatacgatactctttgtgtccgcgatccaccaccacgaagcacttccactccccaaaaatgttg |
39974782 |
T |
|
| Q |
211 |
aagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
308 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
39974781 |
aagcgtatatgatatcaccattggaacttacgggggagacaacacttgtgtgattcgacacattgcagaaaaaacaaccacacaggtgagaatgatgtc |
39974683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 51 - 307
Target Start/End: Complemental strand, 13228787 - 13228533
Alignment:
| Q |
51 |
tatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacacttgacacattaacatctctcaattaaata |
150 |
Q |
| |
|
|||||||||||||||| ||||||| |||| || || ||| | |||||||||||||||||||| ||||||||||||||||||||||||| ||||| || |
|
|
| T |
13228787 |
tatgagtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctccattaagta |
13228690 |
T |
|
| Q |
151 |
cgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagac |
250 |
Q |
| |
|
|||||| || ||||| |||||||||||||| | | ||||| ||||| |||||||||||||||| ||||||||||||||||| ||||| | ||||| | |
|
|
| T |
13228689 |
tgagactttttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaagcggatatgatatcaccattgaaacttatg-gggagcc |
13228591 |
T |
|
| Q |
251 |
aacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
307 |
Q |
| |
|
||||||||||||| || | ||||| ||||| | ||| ||||||||||| |||||||| |
|
|
| T |
13228590 |
aacacttgtgtgaatcaacgcattgcagaaagagcaatcacacaagtgaaaatgatgt |
13228533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 308
Target Start/End: Complemental strand, 281814 - 281775
Alignment:
| Q |
269 |
acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
308 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
281814 |
acattgcagaaaaaacaaccacacaagtgagaatgatgtc |
281775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 50814725 - 50814634
Alignment:
| Q |
217 |
atatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
307 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||| ||||||||| |||| |||||| | ||| | ||| ||||| ||||| |||||||| |
|
|
| T |
50814725 |
atatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgt |
50814634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 24183462 - 24183542
Alignment:
| Q |
99 |
caatgtgttattttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccacc |
180 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||||||||| |||||| | ||||||| ||||| || ||||||||||| |
|
|
| T |
24183462 |
caatgtgaaattttaacttacacttaacacattaacatctctccattaaagtc-agactctccgtgttcgtgatccaccacc |
24183542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 28475671 - 28475752
Alignment:
| Q |
99 |
caatgtgttattttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccacc |
180 |
Q |
| |
|
||||||| |||||||| |||||| ||||||||||||||||| ||||| | ||||||| ||||| || ||||||||||| |
|
|
| T |
28475671 |
caatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactctccgtgttcgtgatccaccacc |
28475752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 6554574 - 6554542
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctct |
140 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
6554574 |
attttaactcacacttgacacattaacatctct |
6554542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 21588784 - 21589082
Alignment:
| Q |
11 |
tgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttatt |
110 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
21588784 |
tgagattgacatcacagttacattcaaaatcttaagagattatgagtcatctcactgatatgttattcaatatctattatatgacattcaatgtgttatt |
21588883 |
T |
|
| Q |
111 |
ttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttg |
210 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||||| || || ||||| |
|
|
| T |
21588884 |
ttaacccacccttgacacattaccatctctcaattaaatacgatactcttcgtgtccacgatccaccaccacgaagcactttcgctccccataattgttg |
21588983 |
T |
|
| Q |
211 |
aagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
308 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
21588984 |
aagcgtatatgatatcaccattggaacttacgggggagacaacacttgtgtgattcgacacattgcagaaaaaacaaccacacaggtgagaatgatgtc |
21589082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 52 - 308
Target Start/End: Original strand, 42797278 - 42797532
Alignment:
| Q |
52 |
atgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacacttgacacattaacatctctcaattaaatac |
151 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||| ||| | |||||||||||||||||||| |||||||||||||||||||||| || ||||| | |
|
|
| T |
42797278 |
atgagtcatctcacttatatgtttctcaacatatactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctttctattaagcat |
42797375 |
T |
|
| Q |
152 |
gagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagaca |
251 |
Q |
| |
|
|||||||| || || || ||||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||| | |
|
|
| T |
42797376 |
gagactctctgtatctgctatccaccaccacagaccacttccgctccccaaaaatgttgaagcagatatgatatcaccattgagacttacg-aggagcaa |
42797474 |
T |
|
| Q |
252 |
acacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
308 |
Q |
| |
|
|||||||||||| |||| |||||| ||||| | ||| ||||| ||||| ||||||||| |
|
|
| T |
42797475 |
acacttgtgtgaatcgacacattgcagaaagagcaatcacacgagtgataatgatgtc |
42797532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 96 - 307
Target Start/End: Complemental strand, 13756588 - 13756376
Alignment:
| Q |
96 |
attcaatgtgttattttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgc |
195 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||| ||||| | ||||||||| || || | |||||||||||| | ||||||||| |
|
|
| T |
13756588 |
attcaatgtgttattttaactcacacttgacacattaacatatctatattaagcatgagactctttgtatctactatccaccaccacggaccacttccgc |
13756489 |
T |
|
| Q |
196 |
tccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaa |
294 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||| |||| || |||| ||||||||| |||| |||||| ||||| | ||| ||||||| |
|
|
| T |
13756488 |
tccccaaaaatgttgaagcagatatgatatcaccattgggacttatgtggaagccaacgcttgtgtgaatcgacacattgcagaaagagcaatcacacaa |
13756389 |
T |
|
| Q |
295 |
gtgagaatgatgt |
307 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
13756388 |
gtgataatgatgt |
13756376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 96 - 307
Target Start/End: Original strand, 23141830 - 23142042
Alignment:
| Q |
96 |
attcaatgtgttattttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgc |
195 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| |||||||||||| ||||| | |||||||| || || || |||||||||||| | ||||||||| |
|
|
| T |
23141830 |
attcaatgtgttattttaactcatacttgacacgttaacatctctctattaagcatgagactctctgtatctgctatccaccaccacggaccacttccgc |
23141929 |
T |
|
| Q |
196 |
tccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaa |
294 |
Q |
| |
|
||| | ||||||||||||| ||||||||||||||||| |||||| | ||||| |||| ||||||||| |||| |||||| | ||| | ||| ||||| | |
|
|
| T |
23141930 |
tccccgaaaatgttgaagcagatatgatatcaccattgagacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacga |
23142029 |
T |
|
| Q |
295 |
gtgagaatgatgt |
307 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
23142030 |
gtgataatgatgt |
23142042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 10901477 - 10901546
Alignment:
| Q |
96 |
attcaatgtgttattttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgt |
165 |
Q |
| |
|
|||||||||||||||||||| |||| |||| ||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
10901477 |
attcaatgtgttattttaactcacatttgatacattaacatctctccattaagtacgagactctccgtgt |
10901546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 30254561 - 30254492
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccacc |
177 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| || |||| || |||||||| |||||||| ||| |||| |
|
|
| T |
30254561 |
attttaactcacatttgacacattaacatctttccgttaagtatgagactctccgtgtccgtgattcacc |
30254492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 36096247 - 36095949
Alignment:
| Q |
11 |
tgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttatt |
110 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||| |||| |||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
36096247 |
tgagattgacatcgcagttacattcaaaatcttaagagattatgagtcatctcattgatatgttattcaatatcaattatatggcattcaatgtattatt |
36096148 |
T |
|
| Q |
111 |
ttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttg |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
36096147 |
ttaacccacacttgacacattacaatctctcaattaaatacgatactcttcgtgtccgcgatccaccaccacgaagcacttccgctccccaaaaatgttg |
36096048 |
T |
|
| Q |
211 |
aagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
308 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||| |
|
|
| T |
36096047 |
aagcgtatatgatatcaccattgggacatacgggggatacaacacttgtgtgattcgacacattgcagaaaaaacaaccacaaaggtgagaatgatgtc |
36095949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 308
Target Start/End: Original strand, 12746101 - 12746241
Alignment:
| Q |
168 |
gcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcg |
267 |
Q |
| |
|
|||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
12746101 |
gcgatccaccaccacaaagcatttccgctctccaaaaatgttgaagcgtatatgatatcaccattgggaattacaggggagacaacacttgtgtgattcg |
12746200 |
T |
|
| Q |
268 |
a-acattgtagaaaaaacaaccacacaagtgagaatgatgtc |
308 |
Q |
| |
|
| |||||| || | || ||| ||||||||||||||||||||| |
|
|
| T |
12746201 |
atacattgcag-agaagcaatcacacaagtgagaatgatgtc |
12746241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 50331951 - 50332044
Alignment:
| Q |
52 |
atgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacacttgacacattaacatctctcaattaa |
147 |
Q |
| |
|
||||||||||||||| ||||||| |||| || || ||| | |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
50331951 |
atgagtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctctattaa |
50332044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 50332065 - 50332173
Alignment:
| Q |
200 |
caaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcg-aacattgtagaaaaaacaaccacacaagtga |
298 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| | ||||| |||| ||||||||| ||| |||||| ||||| | ||| ||||| ||||| |
|
|
| T |
50332065 |
caaaaatgttgaagcagatatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgtcacattgcagaaagagcaatcacacgagtga |
50332164 |
T |
|
| Q |
299 |
gaatgatgt |
307 |
Q |
| |
|
|||||||| |
|
|
| T |
50332165 |
taatgatgt |
50332173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 17764170 - 17764122
Alignment:
| Q |
99 |
caatgtgttattttaacccacacttgacacattaacatctctcaattaa |
147 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
17764170 |
caatgtggaattttaactcacacttgtcacattaacatctctccattaa |
17764122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 19065490 - 19065442
Alignment:
| Q |
99 |
caatgtgttattttaacccacacttgacacattaacatctctcaattaa |
147 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
19065490 |
caatgtggaattttaactcacacttgtcacattaacatctctccattaa |
19065442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 33013852 - 33013997
Alignment:
| Q |
11 |
tgagatggacatcacagttacatccaaaatctcaagacattatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttatt |
110 |
Q |
| |
|
|||||| ||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33013852 |
tgagattgacatcacaattacatccaagttcttaagacattatgagtcatctcactaatatgttgttcaatatatattatatgaaattcaatgtgttatt |
33013951 |
T |
|
| Q |
111 |
ttaacccacacttgacacattaacatctctcaattaaatacgagac |
156 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33013952 |
ttaacccacacttgacacattagcatctctcaattaaatacgagac |
33013997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 187 - 308
Target Start/End: Original strand, 33014000 - 33014122
Alignment:
| Q |
187 |
cacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcga-acattgtagaaaaaaca |
285 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
33014000 |
cacttccgctccccaaaaatgttgaagcgtatatgatatcaccattgggacttacatgggagacaacacttgtgtgattcgacacattgcagaaaaaaca |
33014099 |
T |
|
| Q |
286 |
accacacaagtgagaatgatgtc |
308 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33014100 |
accacacaagtgagaatgatgtc |
33014122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 51 - 307
Target Start/End: Original strand, 38015924 - 38016177
Alignment:
| Q |
51 |
tatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacacttgacacattaacatctctcaattaaata |
150 |
Q |
| |
|
|||||||||||||||| |||||||| |||| || || ||| | |||||||||||||||||||| ||||||||||||||||||||||||| || || || |
|
|
| T |
38015924 |
tatgagtcatctcacttatatgttgctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctccatcaagta |
38016021 |
T |
|
| Q |
151 |
cgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagac |
250 |
Q |
| |
|
|||||| || |||||| |||||||||||||| | |||||||| |||||||||||||||||||| |||||||||| ||||||||||||| | ||||| | |
|
|
| T |
38016022 |
tgagactttt-gtgtccacgatccaccaccacgaaccacttccgttccacaaaaatgttgaagcggatatgatatcgccattgggacttatg-gggagcc |
38016119 |
T |
|
| Q |
251 |
aacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
307 |
Q |
| |
|
| ||||||||||| |||| | |||| ||||| | ||| ||||||||| | |||||||| |
|
|
| T |
38016120 |
agcacttgtgtgaatcgatatattgcagaaagagcaatcacacaagtaataatgatgt |
38016177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 9024985 - 9024953
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctct |
140 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
9024985 |
attttaactcacacttgacacattaacatctct |
9024953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 51 - 307
Target Start/End: Original strand, 3395444 - 3395698
Alignment:
| Q |
51 |
tatgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacacttgacacattaacatctctcaattaaata |
150 |
Q |
| |
|
|||||||||||||||| ||||||| |||| || || ||| | |||||| ||||||||||||| ||||| ||||||||||||||||||| ||||| || |
|
|
| T |
3395444 |
tatgagtcatctcacttatatgtttctcaacatctactatt--gcattcaaagtgttattttaactcacacctgacacattaacatctctccattaagta |
3395541 |
T |
|
| Q |
151 |
cgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagac |
250 |
Q |
| |
|
||||||||| ||||| |||||||||||||| | | ||||| ||||| |||||||||||||||| |||||||||||||||||| ||||| | ||||||| |
|
|
| T |
3395542 |
tgagactctttgtgtctgcgatccaccaccaaaaaccacttatgctccccaaaaatgttgaagcggatatgatatcaccattggaacttatg-gggagac |
3395640 |
T |
|
| Q |
251 |
aacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
307 |
Q |
| |
|
||||||||||||| |||| || ||| ||||| | ||| ||||||||||| |||||||| |
|
|
| T |
3395641 |
aacacttgtgtgaatcgacacgttgcagaaagagcaatcacacaagtgaaaatgatgt |
3395698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 5788821 - 5789119
Alignment:
| Q |
13 |
agatggacatcacagttacatccaaaatctcaagacatta----tgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgtta |
108 |
Q |
| |
|
|||| ||||||||| | || ||||||||| ||||||||| |||||||||||||| ||||||||||||| || || ||| | ||||||||||||| |
|
|
| T |
5788821 |
agattgacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgtta |
5788918 |
T |
|
| Q |
109 |
ttttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgt |
208 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| ||||| || |||||||| ||||| ||||||||||||||| | |||||||||| | ||||||||| |
|
|
| T |
5788919 |
ttttaactcacatttgacacattaacatctcttcattaagtatgagactctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgt |
5789018 |
T |
|
| Q |
209 |
tgaagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgatt--cga-acattgtagaaaaaacaaccacacaagtgagaatgat |
305 |
Q |
| |
|
||||||| |||||||||| ||||| |||||| | ||||| |||||||||||||| | || |||||| ||||| | ||| |||||||||||||||||| |
|
|
| T |
5789019 |
tgaagcgggtatgatatcaacattgagacttatg-gggagccaacacttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgat |
5789117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 307
Target Start/End: Original strand, 41754529 - 41754620
Alignment:
| Q |
217 |
atatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaagtgagaatgatgt |
307 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||| ||||||||| |||| |||||| | ||| | ||| ||||| ||||| |||||||| |
|
|
| T |
41754529 |
atatgatatcaccattgggacttatgggggagccaacgcttgtgtgaatcgacacattgcataaagagcaatcacacgagtgataatgatgt |
41754620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 19040737 - 19040698
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctctcaattaa |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
19040737 |
attttaactcacacttgacacattaacatctctccattaa |
19040698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 19994496 - 19994590
Alignment:
| Q |
118 |
acacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaa |
212 |
Q |
| |
|
||||||||||||||| |||||||| ||||| | ||||||||||||||| ||||||||| || | | ||||||||||| | | ||||||||| |
|
|
| T |
19994496 |
acacttgacacattagcatctctccattaagtgtcagactcttcgtgtccatgatccaccatcaaaaactacttccgctcctccacaatgttgaa |
19994590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 39839134 - 39839167
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctctc |
141 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
39839134 |
attttaactcacacttgacacattaacatctctc |
39839167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 36720106 - 36720074
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctct |
140 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
36720106 |
attttaactcacacttgacacattaacatctct |
36720074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0159 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0159
Description:
Target: scaffold0159; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 33194 - 33492
Alignment:
| Q |
13 |
agatggacatcacagttacatccaaaatctcaagacatta----tgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgtta |
108 |
Q |
| |
|
|||| ||||||||| | || ||||||||| ||||||||| |||||||||||||| ||||||||||||| || || ||| | ||||||||||||| |
|
|
| T |
33194 |
agattgacatcacaacttcacccaaaatcttaagacattagatatgagtcatctcacttatatgttgttcaacatctactatt--gcattcaatgtgtta |
33291 |
T |
|
| Q |
109 |
ttttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgt |
208 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| ||||| || |||||||| ||||| ||||||||||||||| | |||||||||| | ||||||||| |
|
|
| T |
33292 |
ttttaactcacatttgacacattaacatctcttcattaagtatgagactctctgtgtctgcgatccaccaccacgaaccacttccgcttcccaaaaatgt |
33391 |
T |
|
| Q |
209 |
tgaagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgatt--cga-acattgtagaaaaaacaaccacacaagtgagaatgat |
305 |
Q |
| |
|
||||||| |||||||||| ||||| |||||| | ||||| |||||||||||||| | || |||||| ||||| | ||| |||||||||||||||||| |
|
|
| T |
33392 |
tgaagcgggtatgatatcaacattgagacttatg-gggagccaacacttgtgtgaatgatgacacattgcagaaagagcaatcacacaagtgagaatgat |
33490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 52 - 280
Target Start/End: Complemental strand, 1599776 - 1599549
Alignment:
| Q |
52 |
atgagtcatctcactgatatgttgttcaatatatattatatggaattcaatgtgttattttaacccacacttgacacattaacatctctcaattaaatac |
151 |
Q |
| |
|
||||||||||||||| ||||||| |||| || || ||| | |||||||||||||||||||| ||||||||||||||||||||||||| ||||| | |
|
|
| T |
1599776 |
atgagtcatctcacttatatgtttctcaacatctactatt--gcattcaatgtgttattttaactcacacttgacacattaacatctctctattaagcat |
1599679 |
T |
|
| Q |
152 |
gagactcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagaca |
251 |
Q |
| |
|
|||||||| || || || ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||||| | ||||| || |
|
|
| T |
1599678 |
gagactctctgtatctgctatccaccaccacataccacttccgctcccaaaaaatgttgaagcatatatgatatcacctttgggacttatgggggagcca |
1599579 |
T |
|
| Q |
252 |
acacttgtgtgattcga-acattgtagaaa |
280 |
Q |
| |
|
| |||||||||| |||| |||||| ||||| |
|
|
| T |
1599578 |
atacttgtgtgaatcgacacattgcagaaa |
1599549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 263
Target Start/End: Complemental strand, 26894952 - 26894788
Alignment:
| Q |
99 |
caatgtgttattttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgctcc |
198 |
Q |
| |
|
|||||||||||||||| ||||||||| | ||||||||||||| ||||| || |||||| | |||||| || ||||||||||| | ||||||| |||| |
|
|
| T |
26894952 |
caatgtgttattttaaatcacacttgatatattaacatctctccattaagtatgagactatccgtgtctgcaatccaccaccatgaaccacttccactcc |
26894853 |
T |
|
| Q |
199 |
acaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtga |
263 |
Q |
| |
|
| |||||||||||| | |||| |||||| ||||||||||| | || || ||||| |||||||| |
|
|
| T |
26894852 |
cctaaaatgttgaagtggatattatatcattattgggacttatggggtagccaacagttgtgtga |
26894788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 7428531 - 7428570
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctctcaattaa |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
7428531 |
attttaactcacacttgacacattaacatctctccattaa |
7428570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 96 - 307
Target Start/End: Original strand, 43387134 - 43387344
Alignment:
| Q |
96 |
attcaatgtgttattttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgc |
195 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||| |||||||| |||||| | ||||| || |
|
|
| T |
43387134 |
attcaatgtgtaattttaactcacacttgacacattaacatctctctgttaagtacgagactctccgtgtctgcgatcca-caccacgaaccacttttgc |
43387232 |
T |
|
| Q |
196 |
tccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagacaacacttgtgtgattcga-acattgtagaaaaaacaaccacacaa |
294 |
Q |
| |
|
||| |||||||||||| || |||||||||||||||||||||||| | |||| |||||||||||||| | || ||| |||||||||| ||| ||||||| |
|
|
| T |
43387233 |
tcccaaaaaatgttgaaacggatatgatatcaccattgggacttatg-gggatccaacacttgtgtgaattgacacaatgtagaaaaagcaatcacacaa |
43387331 |
T |
|
| Q |
295 |
gtgagaatgatgt |
307 |
Q |
| |
|
|||| ||| |||| |
|
|
| T |
43387332 |
gtgaaaataatgt |
43387344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 1992462 - 1992423
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctctcaattaa |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
1992462 |
attttaactcacacttgacacattaacatctctccattaa |
1992423 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 147
Target Start/End: Original strand, 20306779 - 20306818
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctctcaattaa |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
20306779 |
attttaactcacacttgacacattaacatctctccattaa |
20306818 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 40946559 - 40946520
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctctcaattaa |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
40946559 |
attttaactcacacttgacacattaacatctctccattaa |
40946520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 16852011 - 16851931
Alignment:
| Q |
99 |
caatgtgttattttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccacc |
180 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||||||||| |||||| | ||||||||||||| || ||||||||||| |
|
|
| T |
16852011 |
caatgtgaaattttaacttacactgaacacattaacatctctccattaaagtc-agactcttcgtgttcgtgatccaccacc |
16851931 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 47783184 - 47783135
Alignment:
| Q |
110 |
tttaacccacacttgacacattaacatctctcaattaaatacgagactct |
159 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
47783184 |
tttaactcacacttgacacattaacatctattccttaaatacgagactct |
47783135 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 50253 - 50384
Alignment:
| Q |
96 |
attcaatgtgttattttaacccacacttgacacattaacatctctcaattaaatacgagactcttcgtgtccgcgatccaccaccacatagcacttccgc |
195 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| ||||| |||||| ||||| ||||||||||| ||||||||||||||||| || | |||||| || |
|
|
| T |
50253 |
attcaacgtgttattttaactgacacttgacatattaaattctctccattaagtacgagactctctatgtccgcgatccaccactacgaaccacttctgc |
50352 |
T |
|
| Q |
196 |
tccacaaaaatgttgaagcgtatatgatatca |
227 |
Q |
| |
|
||| ||||| ||||||||| ||||||||||| |
|
|
| T |
50353 |
tcccaaaaaacgttgaagcggatatgatatca |
50384 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 300
Target Start/End: Complemental strand, 14517 - 14373
Alignment:
| Q |
157 |
tcttcgtgtccgcgatccaccaccacatagcacttccgctccacaaaaatgttgaagcgtatatgatatcaccattgggacttacgtgggagacaacact |
256 |
Q |
| |
|
||||||| ||| | |||||||| ||| | ||| |||||||| |||||||||||||||| |||||||||||||||| |||||| | |||| ||||||| |
|
|
| T |
14517 |
tcttcgtatccacaatccaccatcacgaaccacatccgctcctcaaaaatgttgaagcggatatgatatcaccattaagacttatggaggagccaacact |
14418 |
T |
|
| Q |
257 |
tgtgtgattcga-acattgtagaaaaaacaaccacacaagtgaga |
300 |
Q |
| |
|
||||||| || | |||||| ||||| ||| ||||||||||||| |
|
|
| T |
14417 |
tgtgtgaatcaacacattgaagaaagggcaatcacacaagtgaga |
14373 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1345 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1345
Description:
Target: scaffold1345; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 1888 - 1849
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctctcaattaa |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1888 |
attttaactcacacttgacacattaacatctctcaattaa |
1849 |
T |
|
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 43989722 - 43989683
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctctcaattaa |
147 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43989722 |
attttaactcacacttgacacattaacatctctcaattaa |
43989683 |
T |
|
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Target: scaffold0114 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 37073 - 37041
Alignment:
| Q |
108 |
attttaacccacacttgacacattaacatctct |
140 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
37073 |
attttaactcacacttgacacattaacatctct |
37041 |
T |
|
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