View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_134 (Length: 321)

Name: NF9839A_low_134
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_134
NF9839A_low_134
[»] chr8 (3 HSPs)
chr8 (6-321)||(7452581-7452897)
chr8 (174-306)||(16420774-16420906)
chr8 (272-321)||(19384572-19384621)
[»] chr1 (9 HSPs)
chr1 (14-321)||(36306013-36306321)
chr1 (83-288)||(21528427-21528632)
chr1 (174-321)||(37530795-37530942)
chr1 (225-321)||(48265533-48265629)
chr1 (174-321)||(32353061-32353208)
chr1 (174-321)||(48073195-48073342)
chr1 (251-306)||(30970449-30970504)
chr1 (256-306)||(25504839-25504889)
chr1 (278-315)||(3073985-3074022)
[»] chr7 (9 HSPs)
chr7 (9-321)||(15653303-15653616)
chr7 (9-277)||(46623966-46624235)
chr7 (118-306)||(12378436-12378624)
chr7 (174-321)||(13440282-13440429)
chr7 (251-321)||(45943080-45943150)
chr7 (256-305)||(27941340-27941389)
chr7 (251-306)||(43105555-43105610)
chr7 (256-306)||(25924314-25924364)
chr7 (256-306)||(45992820-45992870)
[»] chr3 (10 HSPs)
chr3 (9-321)||(30166942-30167255)
chr3 (83-321)||(49731605-49731843)
chr3 (174-321)||(2813264-2813411)
chr3 (174-306)||(29309652-29309784)
chr3 (174-321)||(6176242-6176389)
chr3 (199-306)||(9379341-9379448)
chr3 (251-321)||(23602002-23602072)
chr3 (261-317)||(28308709-28308765)
chr3 (256-306)||(30435297-30435347)
chr3 (257-306)||(25872955-25873004)
[»] chr2 (10 HSPs)
chr2 (9-306)||(45421763-45422062)
chr2 (174-321)||(43627728-43627875)
chr2 (174-320)||(26894376-26894522)
chr2 (174-320)||(26899815-26899961)
chr2 (206-303)||(13550371-13550468)
chr2 (251-321)||(33548101-33548171)
chr2 (256-306)||(15017920-15017970)
chr2 (272-321)||(22052856-22052905)
chr2 (250-307)||(7300918-7300975)
chr2 (241-321)||(31085468-31085548)
[»] chr5 (6 HSPs)
chr5 (6-321)||(10486515-10486831)
chr5 (89-321)||(34481176-34481408)
chr5 (164-321)||(587745-587902)
chr5 (256-306)||(11574540-11574590)
chr5 (256-302)||(22095096-22095142)
chr5 (101-138)||(6049633-6049670)
[»] chr4 (15 HSPs)
chr4 (6-321)||(3129577-3129890)
chr4 (83-321)||(8654746-8654984)
chr4 (137-305)||(7662966-7663134)
chr4 (94-321)||(47541154-47541381)
chr4 (174-321)||(2631627-2631774)
chr4 (174-321)||(55298849-55298996)
chr4 (174-321)||(20675251-20675398)
chr4 (174-321)||(23873240-23873387)
chr4 (6-63)||(7662904-7662961)
chr4 (256-315)||(29553586-29553645)
chr4 (256-306)||(23657639-23657689)
chr4 (174-321)||(8486745-8486892)
chr4 (256-306)||(49926112-49926162)
chr4 (256-306)||(19114680-19114730)
chr4 (256-306)||(19647953-19648003)
[»] scaffold0029 (1 HSPs)
scaffold0029 (6-321)||(134449-134765)
[»] scaffold0002 (2 HSPs)
scaffold0002 (6-321)||(312276-312592)
scaffold0002 (6-321)||(327730-328046)
[»] scaffold0418 (2 HSPs)
scaffold0418 (137-305)||(7920-8088)
scaffold0418 (6-63)||(8093-8149)
[»] scaffold0131 (1 HSPs)
scaffold0131 (6-185)||(4144-4324)
[»] chr6 (8 HSPs)
chr6 (174-321)||(23347231-23347378)
chr6 (174-321)||(25318083-25318230)
chr6 (174-321)||(26205577-26205724)
chr6 (174-321)||(15674054-15674205)
chr6 (257-306)||(5085873-5085922)
chr6 (256-306)||(19255884-19255934)
chr6 (256-306)||(33640162-33640212)
chr6 (269-306)||(33630341-33630378)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 321
Target Start/End: Complemental strand, 7452897 - 7452581
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 104  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||    
T  7452897 gtttcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttctcgcccacgtggctaggagggttggagatg 7452798  T
Q  105 gttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtc 204  Q
    ||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  7452797 gttctgatacgttgttttggtatgataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtc 7452698  T
Q  205 tgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  7452697 tgtggcagacttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgt 7452598  T
Q  305 agaattttacttcttga 321  Q
    ||   ||||||||||||    
T  7452597 agggctttacttcttga 7452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 16420774 - 16420906
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||||||||| |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  16420774 tgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 16420873  T
Q  274 gcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||||||||||||| |||| ||| ||||    
T  16420874 gcagtgggaggaggagttgctagatgagcgtag 16420906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
Q  272 tggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    |||||||||||||||||| |||||| |||||||||   ||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga 19384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 36306321 - 36306013
Alignment:
Q  14 ttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggttctgat 112  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36306321 ttggtggagggaggtgagtcgtcttagtgatagtgttagtgagggtgattgtgggtggtttgtcggccacgtggctaggagggttggagatggttctgat 36306222  T
Q  113 acgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcag 212  Q
    ||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  36306221 acgttgttttggtatgataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcag 36306122  T
Q  213 acttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaatttt 312  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||   |||    
T  36306121 acttgttctctgttgatttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggcttt 36306022  T
Q  313 acttcttga 321  Q
    |||||||||    
T  36306021 acttcttga 36306013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 83 - 288
Target Start/End: Complemental strand, 21528632 - 21528427
Alignment:
Q  83 gtggctaggagggttggagatggttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt 182  Q
    ||||||||||||||||||||||   ||||||||||||||||||  |||  |||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  21528632 gtggctaggagggttggagatgaagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagt 21528533  T
Q  183 taacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtggga 282  Q
    |||| || |||||| |||||||||| | |||||||||||||||||||| ||||||   ||||||| | ||||||||||| ||||| || ||| |||||||    
T  21528532 taacagagaataagttcatgtctgttggagacttgttctctgttgattcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtggga 21528433  T
Q  283 ggagga 288  Q
    ||||||    
T  21528432 ggagga 21528427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 321
Target Start/End: Complemental strand, 37530942 - 37530795
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   |||| ||||||||||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  37530942 tgtttgagttaacagagaataagactatgtatgtggcagacttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatg 37530843  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    |||||||||||||| |||| |||||||||||||   ||||||||||||    
T  37530842 gcagtgggaggaggggttgctagaggagtgtagggctttacttcttga 37530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 225 - 321
Target Start/End: Original strand, 48265533 - 48265629
Alignment:
Q  225 ttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||| |||||| || ||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||   ||||||||||||    
T  48265533 ttgatctggagcggcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga 48265629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||| ||||| |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||| ||||||||||| |||| ||||||||   ||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga 32353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 48073195 - 48073342
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  48073195 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 48073294  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    | ||||||||||||||||| |||| |||||| |   ||||||||||||    
T  48073295 ggagtgggaggaggagttgctagatgagtgtggggctttacttcttga 48073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 30970449 - 30970504
Alignment:
Q  251 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||||||||||||||||||  ||||||||||||| || | | |||||||||    
T  30970449 tggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtag 30970504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 25504839 - 25504889
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  25504839 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 25504889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 3074022 - 3073985
Alignment:
Q  278 tgggaggaggagttgttagaggagtgtagaattttact 315  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  3074022 tgggaggaggagttgttaggggagtgtaggattttact 3073985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 15653303 - 15653616
Alignment:
Q  9 tcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggtt 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |    
T  15653303 tcgtgttggtggagggaggtgagtcgtcttagggatagtgttggtgagggtgattgtgggtggtttgttggccacgtggctaggagggttggagatggat 15653402  T
Q  108 ctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgt 207  Q
    |||||||||||||||||| ||||  |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |    
T  15653403 ctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaataagctcatgtctat 15653502  T
Q  208 ggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtaga 307  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||     
T  15653503 ggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg 15653602  T
Q  308 attttacttcttga 321  Q
      ||||||||||||    
T  15653603 gctttacttcttga 15653616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 46624235 - 46623966
Alignment:
Q  9 tcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggtt 107  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||| ||||||| || |||||||||||||||||| |||||||||    
T  46624235 tcgtgttggtggagggaggtgagtcgtattagggatagtgttggcgagggtgactgtgggtggtttgttggtcacgtggctaggagggttagagatggtt 46624136  T
Q  108 ctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgt 207  Q
    |||||||||||||||||| ||||  |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  46624135 ctgatacgttgttttggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgt 46624036  T
Q  208 ggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcag 277  Q
    ||||||||||||||||||||||||||||||||||||  || | ||||||||||||||||| |||||||||    
T  46624035 ggcagacttgttctctgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggcag 46623966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 118 - 306
Target Start/End: Original strand, 12378436 - 12378624
Alignment:
Q  118 gttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttg 217  Q
    |||||||||||||  |||| ||| |||||||||| ||||||  || | || ||||||||||||||||| ||| |||||| |||||||||||||| | |||    
T  12378436 gttttggtatgataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttg 12378535  T
Q  218 ttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    |||| |||| | | | ||| |  ||||| | | | |||| ||||||| || ||||||||||||||||||||| |||||| |||||||||    
T  12378536 ttctttgttaagtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtag 12378624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 321
Target Start/End: Complemental strand, 13440429 - 13440282
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  13440429 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 13440330  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    | ||||||||||||||||| |||| |||||| |   ||||||||||||    
T  13440329 gtagtgggaggaggagttgctagatgagtgttgggctttacttcttga 13440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 45943150 - 45943080
Alignment:
Q  251 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    |||||||||||  ||||||| ||||||||||||||||||||| |||||||||||||   ||||||||||||    
T  45943150 tggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 45943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 27941340 - 27941389
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgta 305  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  27941340 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgta 27941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 43105610 - 43105555
Alignment:
Q  251 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    |||||||||||||| || |||||||| |||||||||||| ||||||  ||||||||    
T  43105610 tggaggtggaggcgcaggttgtggcaatgggaggaggagatgttagcagagtgtag 43105555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 25924364 - 25924314
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| || ||||||  |||||||||||||||||||| |||||||||    
T  25924364 gtggaggcggagtttgtgggcgtgggaggaggagttgttagtggagtgtag 25924314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 45992870 - 45992820
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  45992870 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 45992820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 30166942 - 30167255
Alignment:
Q  9 tcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggtt 107  Q
    ||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||| ||||||  || |||||||||||||||||||| |||||||    
T  30166942 tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt 30167041  T
Q  108 ctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgt 207  Q
    ||||||||||||||||||  |||  |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||    
T  30167042 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgt 30167141  T
Q  208 ggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtaga 307  Q
    |||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||     
T  30167142 ggcagacttgttctctgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtagg 30167241  T
Q  308 attttacttcttga 321  Q
    | ||||||||||||    
T  30167242 actttacttcttga 30167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 83 - 321
Target Start/End: Original strand, 49731605 - 49731843
Alignment:
Q  83 gtggctaggagggttggagatggttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt 182  Q
    |||||||||||||||||||||||  |||| || |||||||||| ||||  |||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  49731605 gtggctaggagggttggagatggagctgacacattgttttggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagt 49731704  T
Q  183 taacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtggga 282  Q
    |||| || |||||| |||||| |||||||||||||||||||||||||  |||||||| ||||||| | ||||||||||| ||||| ||||||||||||||    
T  49731705 taacagagaataagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtggcagtggga 49731804  T
Q  283 ggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    |||||||||||| | |||||||||   ||||||||||||    
T  49731805 ggaggagttgttggcggagtgtagggctttacttcttga 49731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 2813264 - 2813411
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  2813264 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 2813363  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  2813364 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2813411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 306
Target Start/End: Complemental strand, 29309784 - 29309652
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||| ||||| |||||| ||||||| |||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  29309784 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtcgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 29309685  T
Q  274 gcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||||||||||||| |||| ||||||||    
T  29309684 gcagtgggaggaggagttgctagatgagtgtag 29309652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 6176242 - 6176389
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||  || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || |     
T  6176242 tgtttgagttaatagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttata 6176341  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  6176342 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 6176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 9379448 - 9379341
Alignment:
Q  199 catgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagag 298  Q
    ||||| ||||||| ||||||||| ||||||||  ||||||  ||||| | | |||||||||||||| || || |||||||||||||||| | |||||| |    
T  9379448 catgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcg 9379349  T
Q  299 gagtgtag 306  Q
    ||||||||    
T  9379348 gagtgtag 9379341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 23602072 - 23602002
Alignment:
Q  251 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||| | ||| || ||||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  23602072 tggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23602002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 317
Target Start/End: Complemental strand, 28308765 - 28308709
Alignment:
Q  261 ggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttc 317  Q
    ||||||| ||||||  ||||||||||||| | |||| ||||||||||||||||||||    
T  28308765 ggcgtaggttgtgggcgtgggaggaggagatcttaggggagtgtagaattttacttc 28308709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 30435347 - 30435297
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| || |||||| |||||||||||||| |||||| |||||||||    
T  30435347 gtggaggcggaggttgtgggagtgggaggaggagctgttaggggagtgtag 30435297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 25872955 - 25873004
Alignment:
Q  257 tggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||| ||||| || |||||||||||||||| |||| |||||||||||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtag 25873004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 45422062 - 45421763
Alignment:
Q  9 tcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatggtt 107  Q
    ||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||| ||||||  || |||||||||||||||||||| |||||||    
T  45422062 tcgtgttggtggagggaggtgagtcgtattagggatagtgctggtgagggtgactgtgggtggtttggtggtcacgtggctaggagggttggtgatggtt 45421963  T
Q  108 ctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgt 207  Q
    ||||||||||||||||||  |||  |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||    
T  45421962 ctgatacgttgttttggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgt 45421863  T
Q  208 ggcagacttgttctctgttgatttggagcagcagggg-gttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    |||||||||||||||||||||| ||||||||||||||  || | |||||||||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  45421862 ggcagacttgttctctgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtag 45421763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 321
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||  ||||| |||||| ||||| |||||| ||||  |  |||||  || ||||||||||| ||||| || ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 43627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 320
Target Start/End: Original strand, 26894376 - 26894522
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||||||  | |||||| ||||||||| || ||||| |  ||||   || ||||||||||| ||||| || ||    
T  26894376 tgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatg 26894475  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttg 320  Q
    ||||||||||||||||||| |||| ||||||||   |||||||||||    
T  26894476 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 320
Target Start/End: Original strand, 26899815 - 26899961
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||||||  | |||||| ||||||||| || ||||| |  ||||   || ||||||||||| ||||| || ||    
T  26899815 tgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttgcttcggagcggtgggggaaggtgtggaggtggagacgtaggttatg 26899914  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttg 320  Q
    ||||||||||||||||||| |||| ||||||||   |||||||||||    
T  26899915 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 206 - 303
Target Start/End: Complemental strand, 13550468 - 13550371
Alignment:
Q  206 gtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtg 303  Q
    ||||| |||||| | |||||||||| |||||||  ||||| ||| ||||||||||| ||||| || ||||||||||| ||||| ||| ||||||||||    
T  13550468 gtggcggacttgctttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatggcagtgggatgaggacttgctagaggagtg 13550371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 33548171 - 33548101
Alignment:
Q  251 tggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||| ||||| || ||||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  33548171 tggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 33548101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 15017970 - 15017920
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| |||||||||  ||||||||||||| ||||||||||||||||    
T  15017970 gtggaggcggagattgtgggtgtgggaggaggagatgttagaggagtgtag 15017920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 22052905 - 22052856
Alignment:
Q  272 tggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||||| |||||||||||||   ||||||||||||    
T  22052905 tggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 22052856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 7300975 - 7300918
Alignment:
Q  250 atggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtaga 307  Q
    |||||| |||||| | |||||||||  ||||||||||||| || ||||||||||||||    
T  7300975 atggagttggaggagaagattgtgggtgtgggaggaggagatggtagaggagtgtaga 7300918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 321
Target Start/End: Original strand, 31085468 - 31085548
Alignment:
Q  241 gggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||| ||| |||||||||||  | || ||||| ||||||||||||||| ||||||  ||||||||   ||||||||||||    
T  31085468 gggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga 31085548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 10486515 - 10486831
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 104  Q
    |||||||||||||||||||||||||||||||||| || ||||| |||||| || |||||  |  ||||||| |  || ||||||||||||||||||||||    
T  10486515 gtttcgtgttggtggagggaggtgagtcgtcttaggggtagtgatggtgatggagagtgcagctggtttgttgatcatgtggctaggagggttggagatg 10486614  T
Q  105 gttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtc 204  Q
    |  ||||||||||||||||||  |||  |||||||| |||| ||||||| ||||||||||||||||| ||||||||||||||  | |||||| |||||||    
T  10486615 gagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaataagttcatgtc 10486714  T
Q  205 tgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgt 304  Q
    |||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||| ||||| ||||||||||||||||||||  |||||| |||||||    
T  10486715 tgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatgttagcggagtgt 10486814  T
Q  305 agaattttacttcttga 321  Q
    ||   ||||||||||||    
T  10486815 agggctttacttcttga 10486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 89 - 321
Target Start/End: Complemental strand, 34481408 - 34481176
Alignment:
Q  89 aggagggttggagatggttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacgg 188  Q
    ||||| ||||| |||||  ||||||| | ||||||||  |||  |||||||| ||| |||||| | |||||  | ||| || |  ||||||||||||| |    
T  34481408 aggagagttggtgatggggctgatacttcgttttggtccgataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacag 34481309  T
Q  189 aaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggagga 288  Q
    | ||||||   |||||||||||| | ||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||||||||||||||||     
T  34481308 agaataagtctatgtctgtggcatatttgctctctgttgattcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggg 34481209  T
Q  289 gttgttagaggagtgtagaattttacttcttga 321  Q
    |||| |||||||||||||   ||||||||||||    
T  34481208 gttgctagaggagtgtagggctttacttcttga 34481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 321
Target Start/End: Complemental strand, 587902 - 587745
Alignment:
Q  164 tttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggc 263  Q
    |||||| |||||||||| ||||| || ||||||  |||  |  ||||| |||||||||||||   || ||||||   ||||| ||| |||||||||||||    
T  587902 tttcgtcgactgtttgaattaactgagaataagaccatcacaatggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggc 587803  T
Q  264 gtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||  | |||  ||||||||||||  ||||||||||||||||   ||||||||||||    
T  587802 gtaggctatggatgtgggaggaggatatgttagaggagtgtagggctttacttcttga 587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 11574540 - 11574590
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| |||||||||  ||||||||||||| ||||||||||||||||    
T  11574540 gtggaggcggagattgtgggcgtgggaggaggagatgttagaggagtgtag 11574590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 22095096 - 22095142
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagt 302  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||    
T  22095096 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagt 22095142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 6049670 - 6049633
Alignment:
Q  101 gatggttctgatacgttgttttggtatgatgagtggtt 138  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  6049670 gatggttctgatactttgttttggtatgataagtggtt 6049633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 3129577 - 3129890
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 104  Q
    |||||||||||||||||||||||||||||| ||| || ||||| |||||| || ||| | ||  ||||||| |  || ||||||||||||||||||||||    
T  3129577 gtttcgtgttggtggagggaggtgagtcgttttaggggtagtgatggtgatggagagggcggctggtttgttgatcatgtggctaggagggttggagatg 3129676  T
Q  105 gttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtc 204  Q
    |  ||||||| |||||||||| || |  |||||||| |||||||||||| |||||||||||| ||||||||||||||||||| || |||||| |||||||    
T  3129677 gagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaataagttcatgtc 3129776  T
Q  205 tgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgt 304  Q
    ||||||||||||||||||| |||||| ||||||||  ||||||   ||||||||||| ||| | |||||||||||   ||||||| |||||| |||||||    
T  3129777 tgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtg---ggaggagatgttagcggagtgt 3129873  T
Q  305 agaattttacttcttga 321  Q
    ||   ||||||||||||    
T  3129874 agggctttacttcttga 3129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 83 - 321
Target Start/End: Original strand, 8654746 - 8654984
Alignment:
Q  83 gtggctaggagggttggagatggttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagt 182  Q
    |||||||||||||||||||||||  || |||||||||||||||  |||  |||||||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  8654746 gtggctaggagggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagt 8654845  T
Q  183 taacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtggga 282  Q
    |||| || |||||| | |||||||||||||||||||| |||||||||| |||||||  ||||||| | ||||||||||| ||||| ||||||||||||||    
T  8654846 taacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtggga 8654945  T
Q  283 ggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    |||||| ||||||| |||||||||   ||||||||||||    
T  8654946 ggaggacttgttagcggagtgtagggctttacttcttga 8654984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 137 - 305
Target Start/End: Original strand, 7662966 - 7663134
Alignment:
Q  137 ttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagc 236  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  237 agcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgta 305  Q
    |||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgta 7663134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 94 - 321
Target Start/End: Complemental strand, 47541381 - 47541154
Alignment:
Q  94 ggttggagatggttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaat 193  Q
    ||||||||||||   ||||||||||||||||| ||||  |||||||| |||||||||||| ||||| |||||| ||||||||||||||||||| || |||    
T  47541381 ggttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaat 47541282  T
Q  194 aagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgt 293  Q
    ||| |||||||||||||||||||||| |||||||||| |||||||| ||| ||| | ||||||||||| ||| | |||||||||||| |||||||| |||    
T  47541281 aagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgt 47541182  T
Q  294 tagaggagtgtagaattttacttcttga 321  Q
    ||| |||||||||   ||||||||||||    
T  47541181 tagcggagtgtagggctttacttcttga 47541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 321
Target Start/End: Complemental strand, 2631774 - 2631627
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||||||||| |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  2631774 tgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 2631675  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  2631674 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 321
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 55298849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 321
Target Start/End: Complemental strand, 20675398 - 20675251
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   || || ||||| |||||| ||| |||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  20675398 tgtttgagttaacagagaataagtctatatccgtggccgacttgctctttgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 20675299  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||| | || |||||||| | ||||||||||||    
T  20675298 gcagtgggaggaggagttgcttgatgagtgtaggactttacttcttga 20675251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| |  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 7662904 - 7662961
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagt 63  Q
    ||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||||||    
T  7662904 gtttcgtgttggtggggggaggtgagtcgtattagggatagtggtggtgagggtgagt 7662961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 29553586 - 29553645
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtagaattttact 315  Q
    ||||||||| |||||||||  |||||||||||||||||||||||||||||| | ||||||    
T  29553586 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgtaggactttact 29553645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 23657689 - 23657639
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  23657689 gtggaggcggagattgtgggcgtgggaggaggagttgttagaggagtgtag 23657639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 8486745 - 8486892
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||| || |  |||||| |||||||||||| ||| | |  |||||  || ||||||||||| ||||| || ||    
T  8486745 tgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttgattcggaccggtggggggaggtgtggaggtggagacgtaggttatg 8486844  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    |||||||||| |||||||| ||||  |||||||   ||||||||||||    
T  8486845 gcagtgggagaaggagttgctagattagtgtagggctttacttcttga 8486892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 49926112 - 49926162
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| |||||||||  |||||||||||||||||||| |||||||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtag 49926162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 19114730 - 19114680
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| |||||||||  ||||||||||||| | ||||||||||||||    
T  19114730 gtggaggcggagattgtgggtgtgggaggaggagatattagaggagtgtag 19114680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 19648003 - 19647953
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  19648003 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 19647953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 134449 - 134765
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 104  Q
    ||||| |||||||||||||||||||||||||||| || ||||| |||||  || ||| | ||  ||||||  |  |  ||||||||||||||||||||||    
T  134449 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 134548  T
Q  105 gttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtc 204  Q
    |  || |||||||||||||||  |||  |||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| || |||||| | |||||    
T  134549 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 134648  T
Q  205 tgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgt 304  Q
    ||||||||||||||| ||| |||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||    
T  134649 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 134748  T
Q  305 agaattttacttcttga 321  Q
    ||   ||||||||||||    
T  134749 agggctttacttcttga 134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 312276 - 312592
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 104  Q
    ||||| |||||||||||||||||||||||||||| || ||||| |||||  || ||| | ||  ||||||  |  |  ||||||||||||||||||||||    
T  312276 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 312375  T
Q  105 gttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtc 204  Q
    |  || |||||||||||||||  |||  |||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| || |||||| | |||||    
T  312376 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 312475  T
Q  205 tgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgt 304  Q
    ||||||||||||||| ||| |||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||    
T  312476 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 312575  T
Q  305 agaattttacttcttga 321  Q
    ||   ||||||||||||    
T  312576 agggctttacttcttga 312592  T

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Target: scaffold0002; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 327730 - 328046
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 104  Q
    ||||| |||||||||||||||||||||||||||| || ||||| |||||  || ||| | ||  ||||||  |  |  ||||||||||||||||||||||    
T  327730 gtttcatgttggtggagggaggtgagtcgtcttaggggtagtgatggtgctggagagaggggttggtttggtgatcttgtggctaggagggttggagatg 327829  T
Q  105 gttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtc 204  Q
    |  || |||||||||||||||  |||  |||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| || |||||| | |||||    
T  327830 gagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtc 327929  T
Q  205 tgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgt 304  Q
    ||||||||||||||| ||| |||||| |||||||  ||||||| | ||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||    
T  327930 tgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttgttagcggagtgt 328029  T
Q  305 agaattttacttcttga 321  Q
    ||   ||||||||||||    
T  328030 agggctttacttcttga 328046  T

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Target: scaffold0418 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 137 - 305
Target Start/End: Complemental strand, 8088 - 7920
Alignment:
Q  137 ttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagc 236  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  237 agcagggggttgtatggaggtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgta 305  Q
    |||||||| || | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgta 7920  T

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Target: scaffold0418; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 8149 - 8093
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagt 63  Q
    ||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||||||    
T  8149 gtttcgtgttggtgg-gggaggtgagtcgtattagggatagtggtggtgagggtgagt 8093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 4144 - 4324
Alignment:
Q  6 gtttcgtgttggtggagggaggtgagtcgtcttaaggatagtgttggtgagggtgagtgtggg-ggtttgtcggccacgtggctaggagggttggagatg 104  Q
    |||||||| ||||||||||||||||||||| ||| || ||||| |||||| || ||| | ||  ||||||| |  || |||||| |||||||||||||||    
T  4144 gtttcgtggtggtggagggaggtgagtcgtattaggggtagtgatggtgatggagagagcggttggtttgttgatcatgtggctcggagggttggagatg 4243  T
Q  105 gttctgatacgttgttttggtatgatgagtggttagaggatgttcctttctgtgtccgttttcgtagactgtttgagttaa 185  Q
    |  || |||||||||||||||  |||  |||||||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  4244 gagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaa 4324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 23347231 - 23347378
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    ||||||||||||| || ||||||   ||||| || || |||||| |||||||||||| ||||| |  |||||  || ||||||||||| ||||| || ||    
T  23347231 tgtttgagttaacagagaataagtctatgtccgtcgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 23347330  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||| |||| ||||||||   ||||||||||||    
T  23347331 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23347378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 321
Target Start/End: Complemental strand, 25318230 - 25318083
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    |||||||||||||  | |||||| | ||||| ||||| |||||| | ||||||||||   ||| |  ||||| | | ||||||||||  ||||| || ||    
T  25318230 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 25318131  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||||    
T  25318130 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 25318083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 321
Target Start/End: Complemental strand, 26205724 - 26205577
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagcagcagggggttgtatggaggtggaggcgtagattgtg 273  Q
    |||||||||||||  | |||||| | ||||| ||||| |||||| | ||||||||||   ||| |  ||||| | | ||||||||||  ||||| || ||    
T  26205724 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 26205625  T
Q  274 gcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||||    
T  26205624 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 26205577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 321
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
Q  174 tgtttgagttaacggaaaataagctcatgtctgtggcagacttgttctctgttgatttggagc----agcagggggttgtatggaggtggaggcgtagat 269  Q
    |||||||||||||||| ||||||   ||||||||||| |||||  ||||||||||||  ||||     |   ||||  || ||||||||||| ||||| |    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  270 tgtggcagtgggaggaggagttgttagaggagtgtagaattttacttcttga 321  Q
    ||||||||||||||||||||||| |||| ||||| ||   ||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga 15674054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 5085873 - 5085922
Alignment:
Q  257 tggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    |||||||| |||||||||  ||||||||||||| ||||||||||||||||    
T  5085873 tggaggcggagattgtgggcgtgggaggaggagatgttagaggagtgtag 5085922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 19255934 - 19255884
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  19255934 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 19255884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 33640212 - 33640162
Alignment:
Q  256 gtggaggcgtagattgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||| |||||||||  ||||||||||||| |||||| |||||||||    
T  33640212 gtggaggcggagattgtgggcgtgggaggaggagatgttagtggagtgtag 33640162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 33630378 - 33630341
Alignment:
Q  269 ttgtggcagtgggaggaggagttgttagaggagtgtag 306  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtag 33630341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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