View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_135 (Length: 321)
Name: NF9839A_low_135
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_135 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 27916794 - 27917066
Alignment:
| Q |
9 |
tggtgttttcaggttaccatttcctaattgaattgggatgatggggcaaggagtgattctaacttctcgtaagtggaatttggtt--gtttttccaaaat |
106 |
Q |
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| T |
27916794 |
tggtgttttcaggttaccatttcctaattgaattgggatgatggggcaaggagtgattctaacttctcgtaagtggaatttggttttgtttttccaaaat |
27916893 |
T |
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| Q |
107 |
cacaagtatcttattttgtaatggtaattgaccaagttgaaattgtctttttgcattaggtagaagcaatcacttcttatacgtgaagctgaaataactt |
206 |
Q |
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| T |
27916894 |
cacaactatcttattttgtaatggtaattgaccaagttgaaattgtctttttgcattaggtagaagcaataacttcttatacgtgaagctgaaataactt |
27916993 |
T |
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| Q |
207 |
--tctatataagtcgaatcaaatataacttgttgtacccaaaaaagttatataacttgatgtcgtatgtgtaa |
277 |
Q |
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| T |
27916994 |
tatatatataagtcgaatcaaatataacttgttgtacccaaaaaagttatataacttgatgtcgtatgtgtaa |
27917066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 27917128 - 27917174
Alignment:
| Q |
275 |
taaacatctataatttaaagaacattccataacttgtgtaatattga |
321 |
Q |
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| T |
27917128 |
taaatatctataatttaaagaacattccataacttgtgtaatattga |
27917174 |
T |
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