View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_137 (Length: 319)
Name: NF9839A_low_137
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_137 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 21359801 - 21359489
Alignment:
| Q |
1 |
taccatctccttcatttttcttccacaaaagcacatcaaaagtatttttggcggtaaacattacagattgatttgttccattacgcattatagtaggagt |
100 |
Q |
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| T |
21359801 |
taccatctccttcatttttcttccacaaaagcacatcaaaagtatttttggcagtaaacatgacagattgatttgttccattacgcattatagtaggagt |
21359702 |
T |
|
| Q |
101 |
aacaccagcccaaagcccacgaaggccttcttcctttatgatcattcctgcacaatgcacaggacctctatatttcaaaagctcatggcttagccctttc |
200 |
Q |
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| T |
21359701 |
aacaccagcccaaagcccacgaaggccttcttcctttatgatcattcctgcacaatgcacaggacctctatatttcaaaagctcatggcttagccctttc |
21359602 |
T |
|
| Q |
201 |
tgctgctgcaatcttatcttcaccacctgcagaaaaacacaaggtatataatacaagcttgggattccacatgccaaggacaaactatgcatggatgttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21359601 |
tgctgctgcaatcttatcttcaccacctgcagaaaaacacaaggtatataatacaagcttgggattccacatgccaaggacaaactatgcatggatgttt |
21359502 |
T |
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| Q |
301 |
gagatgttatgtg |
313 |
Q |
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| T |
21359501 |
gagatgttatgtg |
21359489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 37559103 - 37559159
Alignment:
| Q |
244 |
gtatataatacaagcttgggattccacatgccaaggacaaactatgcatggatgttt |
300 |
Q |
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| T |
37559103 |
gtatataatacaaacttgagattccacacgccatggacaaactatgcatgcatgttt |
37559159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 37558893 - 37558929
Alignment:
| Q |
200 |
ctgctgctgcaatcttatcttcaccacctgcagaaaa |
236 |
Q |
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|||||||||||||||||||||||| ||||||| |||| |
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| T |
37558893 |
ctgctgctgcaatcttatcttcactacctgcaaaaaa |
37558929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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