View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_14 (Length: 482)
Name: NF9839A_low_14
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 14 - 482
Target Start/End: Original strand, 34186866 - 34187334
Alignment:
| Q |
14 |
atggacatcattcacacgaagagcaagtgctgaaagtaactcaagatgagacaagtgctggccgtagccgcggaagaggtggctttcgaggtggagctgc |
113 |
Q |
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| T |
34186866 |
atggacataattcacacgaagagcaagtgctgaaagtaactcaagatgagacaagtgctggccgtagccgcggaagaggtggctttcgaggtggagctac |
34186965 |
T |
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| Q |
114 |
tcgaggaagaggcagaggaggtagaggaggaaaggcagcagtggagtgttattattgccatgagtttggacatttccagtatgaatgcccaaataaaccc |
213 |
Q |
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| T |
34186966 |
tcgaggaagaggcaaaggaggtagaggaggaaaggcagcagtggagtgttattattgccatgagtttggacatttccagtatgaatgcccaaataaaccc |
34187065 |
T |
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| Q |
214 |
ctgaacaacaccgcaaattatgctgagaccaacgaggaagcagtgctactcatggcacaactttcatcagatggagaatcaaatacacaagacatgtggt |
313 |
Q |
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| T |
34187066 |
ctgaacaacaccgcaaattatgttgagaccaacgaggaagcaatgctactcatggcacaactttcatcagatggagaatcaaatacacaagacatgtggt |
34187165 |
T |
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| Q |
314 |
tcatcgattcaggctgtagcaaccatatgacaggtagaaaggactggttttcttcacttgatgcttctttttgtgatgaggtaaaattaggaaataatta |
413 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34187166 |
tcatcgattcaggctgcagcaaccatatgacaggtagaaaggactggttttcttcacttgatgcttctttttgtgatgaggtaaaattaggaaataatta |
34187265 |
T |
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| Q |
414 |
tgctcttaaggtcaatgggaagggtgttgtcaaacttttgattaatggagttatgcatttggtgaatga |
482 |
Q |
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| T |
34187266 |
tgctcttaaggtcaatgggaagggtgttgtcaaacttttgattaatggagttatgcattttgtgaatga |
34187334 |
T |
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