View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_144 (Length: 313)
Name: NF9839A_low_144
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_144 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 313
Target Start/End: Complemental strand, 16550488 - 16550185
Alignment:
| Q |
12 |
tgttacagggatgtgattgtttgggctatatcatatttttgatgctcaccttacaaatatggaataaatatttttacaaatcttcaatgttgctttgatg |
111 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16550488 |
tgttacagggatgtgattttttgggctatatcatatttttgatgctcacctcacaaatatggaataaatatttttacaaatcttcaatgttgctttgatg |
16550389 |
T |
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| Q |
112 |
nnnnnnnnn--aagtacatcttttgtattttactattatatgaattctcaattgttttttgaacaaactgaactctcaatctaaactttggaaatggttt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16550388 |
ttttttttttaaagtacatcttttgtattttactattatatgaattctcaattgttttttgaacaaactgaattctcaatctaaactttggaaatggttt |
16550289 |
T |
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| Q |
210 |
aatttgttaacagagctcacaagcacatctctgccattgctcnnnnnnnttaatgtaattactaacctgattctcgacaagtagtttgatgttgagataa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16550288 |
aatttgttaacagagctcacaagcacatctctgccattgctcaaaaaaattaaggtaattactaacctgattctcgacaagtagtttgatgttgaggtaa |
16550189 |
T |
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| Q |
310 |
ttga |
313 |
Q |
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|||| |
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| T |
16550188 |
ttga |
16550185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 66 - 313
Target Start/End: Original strand, 36248702 - 36248955
Alignment:
| Q |
66 |
aaatatggaataaatatttttacaaatcttcaatgttgctttgatgnnnnnnnnn-------aagtacatcttttgtattttactattatatgaattctc |
158 |
Q |
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| T |
36248702 |
aaatatggaataaatatttttacaaatcttcaatgttgctttgatttttttttttttttttaaagtacatcttt-gtattttactattatatgaattctc |
36248800 |
T |
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| Q |
159 |
aattgttttttgaacaaactgaactctcaatctaaactttggaaatggtttaatttgttaacagagctcacaagcacatctctgccattgctcnnnnnnn |
258 |
Q |
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| T |
36248801 |
aattgttttttgaacaaactgaattctaaatctaaactttggaaatggtttaatttgttaacatagctcacaagcacatctctgccattgctcaaaaaaa |
36248900 |
T |
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| Q |
259 |
ttaatgtaattactaacctgattctcgacaagtagtttgatgttgagataattga |
313 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36248901 |
ttaaggtaattactaacctgattctcgacaagtagtttgatgttgagataattga |
36248955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 36248131 - 36248224
Alignment:
| Q |
157 |
tcaattgttttttgaacaaactgaactctcaatctaaactttggaaatggtttaatttgttaacagagctcacaagcacatctctgccattgct |
250 |
Q |
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| T |
36248131 |
tcaattgttttttgaagaaactgaattctcaatctaaactttggaaatggtttaatttgttaacagagctcgcaagcacatctcttccattgct |
36248224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 131 - 250
Target Start/End: Complemental strand, 23084393 - 23084274
Alignment:
| Q |
131 |
tttgtattttactattatatgaattctcaattgttttttgaacaaactgaactctcaatctaaactttggaaatggtttaatttgttaacagagctcaca |
230 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
23084393 |
tttgtattttactattatctgaattctcaattgttttttgaacaaactgaattctcaatctaaactttgaaaatgatttaatttgttaacagagctcaca |
23084294 |
T |
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| Q |
231 |
agcacatctctgccattgct |
250 |
Q |
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| T |
23084293 |
aacacatctcttccattgct |
23084274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 28942797 - 28942870
Alignment:
| Q |
177 |
ctgaactctcaatctaaactttggaaatggtttaatttgttaacagagctcacaagcacatctctgccattgct |
250 |
Q |
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||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28942797 |
ctgaattctcaatctaaattttggaaatgatttaatttgttaacagagctcacaagcacatctcttccattgct |
28942870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 7707883 - 7707758
Alignment:
| Q |
66 |
aaatatggaataaatatttttacaaatcttcaatgttgctttgatgnnnnnnnnn--aagtacatcttttgtattttactattatatgaattctcaattg |
163 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||| ||||||||||||||| | |||||||||||| |
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| T |
7707883 |
aaatatggaataaatatttttacaaatcttcattgttgttttgatgtttttttttttaaatacatcttt-gtattttactattatctaaattctcaattg |
7707785 |
T |
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| Q |
164 |
ttttttgaacaaactgaactctcaatc |
190 |
Q |
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||||||||||||||| || |||||||| |
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| T |
7707784 |
ttttttgaacaaactaaattctcaatc |
7707758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 34613757 - 34613815
Alignment:
| Q |
12 |
tgttacagggatgtgattgtttgggctatatcatat-ttttgatgctcaccttacaaat |
69 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||| | |||||| |
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| T |
34613757 |
tgttacagggatgtgattgtttgggctatatcaaatattttgatgctcacttcacaaat |
34613815 |
T |
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