View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_146 (Length: 312)
Name: NF9839A_low_146
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_146 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0649 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 7564940 - 7564629
Alignment:
| Q |
1 |
atgaagatgatgcaggaaatccaaaatttccagtttttaagatgccagacagtatgaaaaagtatgaatgggaggtgggaactttatttatgactaaggt |
100 |
Q |
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| T |
7564940 |
atgaagatgatgcaggaaatccaaaatttccagtttttaagatgccagacagtatgaaaaagtatgaatgggaggtgggaactttatttatgactaaggt |
7564841 |
T |
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| Q |
101 |
tgattttcagcttgctgttagaacttttgctgttgagaatgctagagatttgaagtttnnnnnnnntgacatgaagagaatgagggtaacttgcaaaggt |
200 |
Q |
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| T |
7564840 |
tgattttcagcttgctgttagaacttttgctgttgagaatgctagagatttgaagtttaaaaaaaatgacatgaagagaatgagggtaatttgcaaaggt |
7564741 |
T |
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| Q |
201 |
aatgattgtgattgggagatgtattgtgctaaaattgaaggtgaggaaacgtggcaattgaggaaaattacaaggaagaatacatgtgcaccagggtgga |
300 |
Q |
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| T |
7564740 |
aatggttgtgattgggagatgtattgtgctaaaattgaaggtgaggaaacgtggcaattgaggaaaattacagggaagcatacatgtgcaccagggtgga |
7564641 |
T |
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| Q |
301 |
aaattaagatga |
312 |
Q |
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|||||||||||| |
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| T |
7564640 |
aaattaagatga |
7564629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 27654033 - 27654344
Alignment:
| Q |
1 |
atgaagatgatgcaggaaatccaaaatttccagtttttaagatgccagacagtatgaaaaagtatgaatgggaggtgggaactttatttatgactaaggt |
100 |
Q |
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||||| ||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27654033 |
atgaaaatgatgcaggaaatccacaatttccagtttttaagatgccaaatagtatgaaaaagtatgaatgggaggtgggaactttatttatgactaaggt |
27654132 |
T |
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| Q |
101 |
tgattttcagcttgctgttagaacttttgctgttgagaatgctagagatttgaagtttnnnnnnnntgacatgaagagaatgagggtaacttgcaaaggt |
200 |
Q |
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| T |
27654133 |
tgattttcagcttgctgttagaacttttgctgttgagaatgctagagatttgaagtttaaaaaaaatgacttgaagagaatgagggtaacttgcaaaggt |
27654232 |
T |
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| Q |
201 |
aatgattgtgattgggagatgtattgtgctaaaattgaaggtgaggaaacgtggcaattgaggaaaattacaaggaagaatacatgtgcaccagggtgga |
300 |
Q |
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||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| | || || |||||||||||| |||||||| |
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| T |
27654233 |
gatggttgtgaatgggaaatgtattgtggtaaaattgaaggtgaggaaacgtggcaattgaggaaaattataggggagcatacatgtgcactagggtgga |
27654332 |
T |
|
| Q |
301 |
aaattaagatga |
312 |
Q |
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|||||||||||| |
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| T |
27654333 |
aaattaagatga |
27654344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 15814767 - 15814660
Alignment:
| Q |
51 |
agtatgaaaaagtatgaatgggaggtgggaactttatttatgactaaggttgattttcagcttgctgttagaacttttgctgttgagaatgctagagatt |
150 |
Q |
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||||||||| ||||| |||||||||| || |||||||||||||| ||| |||||||||| | || || |||||||| | |||| ||||||||||| |||| |
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| T |
15814767 |
agtatgaaagagtataaatgggaggttggtactttatttatgacaaagattgattttcaacatgttgatagaacttattctgtggagaatgctagggatt |
15814668 |
T |
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| Q |
151 |
tgaagttt |
158 |
Q |
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| |||||| |
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| T |
15814667 |
taaagttt |
15814660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 11385019 - 11385137
Alignment:
| Q |
39 |
aagatgccagacagtatgaaaaagtatgaatgggaggtgggaactttatttatgactaaggttgattttcagcttgctgttagaacttttgctgttgaga |
138 |
Q |
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|||||||||| |||||||||| ||| |||||||||| || |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
11385019 |
aagatgccagtcagtatgaaaggctataaatgggaggtaggtactttatttatgacaaaggttgaatttcaagatgctgttagaagttttgctgttgaga |
11385118 |
T |
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| Q |
139 |
atgctagagatttgaagtt |
157 |
Q |
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|| || ||||||||||| |
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| T |
11385119 |
attgtaaggatttgaagtt |
11385137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 21794316 - 21794198
Alignment:
| Q |
39 |
aagatgccagacagtatgaaaaagtatgaatgggaggtgggaactttatttatgactaaggttgattttcagcttgctgttagaacttttgctgttgaga |
138 |
Q |
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|||||||||| |||||||||| ||| |||||||||| || |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
21794316 |
aagatgccagtcagtatgaaaggctataaatgggaggtaggtactttatttatgacaaaggttgaatttcaagatgctgttagaagttttgctgttgaga |
21794217 |
T |
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| Q |
139 |
atgctagagatttgaagtt |
157 |
Q |
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| T |
21794216 |
attgtaaggatttgaagtt |
21794198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 264
Target Start/End: Complemental strand, 2039 - 1856
Alignment:
| Q |
81 |
actttatttatgactaaggttgattttcagcttgctgttagaacttttgctgttgagaatgctagagatttgaagtttnnnnnnnntgacatgaagagaa |
180 |
Q |
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|||||||||||||| ||| |||| ||||| | || ||||||||||| |||||| ||||||||||| ||||| |||||| ||| | | |||| |
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| T |
2039 |
actttatttatgacaaagattgactttcaacatgttgttagaacttatgctgtggagaatgctagggatttaaagtttagaaaaaatgataaacatagaa |
1940 |
T |
|
| Q |
181 |
tgagggtaacttgcaaaggtaatgattgtgattgggagatgtattgtgctaaaattgaaggtgaggaaacgtggcaattgagga |
264 |
Q |
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||||||| |||||||||| | | ||||| ||| |||||| |||||||| ||| ||||||||||||| ||||| ||||||| |
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| T |
1939 |
tgagggtttattgcaaaggtgaaggctgtgagtggcagatgttctgtgctaatattaaaggtgaggaaacatggcagttgagga |
1856 |
T |
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