View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_148 (Length: 311)
Name: NF9839A_low_148
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_148 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 6729460 - 6729294
Alignment:
| Q |
18 |
catcacctttcactggatctgcaacaaccccattctctacctcaacaaattttattcctttctctacactgttatcacttcatcacactaccccccttac |
117 |
Q |
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| T |
6729460 |
catcacccttcactagatctgcaacaaccccattctctacctcaacaaattttattcttttctctacaccgttatcacttcatcacactaccccccttac |
6729361 |
T |
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| Q |
118 |
cgtacctctttcgcaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat |
184 |
Q |
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| T |
6729360 |
cgtacctctttcacaaacccaaacctatggctatttcactcagccgattgttaacacatcgatctat |
6729294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 6729282 - 6729197
Alignment:
| Q |
214 |
tttcagtctcgccgtttcaactcctccacactacaatttttcctactccacaccaccctatcccaagtaccaaacaccaccatatt |
299 |
Q |
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| T |
6729282 |
tttcagtttcgccatttcaactcctccacactacaatttttcctactccacaccaccctatcccacgtaccaaacaccaccatatt |
6729197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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