View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_15 (Length: 476)

Name: NF9839A_low_15
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_15
NF9839A_low_15
[»] chr6 (3 HSPs)
chr6 (13-476)||(25907978-25908441)
chr6 (24-455)||(12072159-12072585)
chr6 (53-367)||(12065465-12065782)
[»] chr4 (5 HSPs)
chr4 (13-207)||(23062976-23063170)
chr4 (272-470)||(23063167-23063365)
chr4 (250-430)||(30629737-30629917)
chr4 (232-307)||(12617584-12617659)
chr4 (79-151)||(12617431-12617503)
[»] chr1 (1 HSPs)
chr1 (16-445)||(15228673-15229093)
[»] chr7 (4 HSPs)
chr7 (234-446)||(21114443-21114653)
chr7 (362-445)||(31958361-31958444)
chr7 (227-304)||(31959293-31959370)
chr7 (260-307)||(31958488-31958535)
[»] chr5 (3 HSPs)
chr5 (228-446)||(14860973-14861191)
chr5 (230-304)||(30042263-30042337)
chr5 (16-56)||(28243068-28243108)
[»] chr3 (5 HSPs)
chr3 (16-111)||(16659755-16659850)
chr3 (16-56)||(6009712-6009752)
chr3 (16-56)||(17783267-17783307)
chr3 (16-56)||(19084786-19084826)
chr3 (16-56)||(19091894-19091934)
[»] chr2 (2 HSPs)
chr2 (229-349)||(33033258-33033378)
chr2 (229-446)||(19060740-19060957)
[»] chr8 (1 HSPs)
chr8 (16-56)||(14502144-14502184)


Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 13 - 476
Target Start/End: Original strand, 25907978 - 25908441
Alignment:
Q  13 ggacatcaagtatatcattaaaatctcctaagatacaccaaggaagagaggtattattcgcaagatttctcaaaaaattccatgaagcacgccttcttct 112  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  25907978 ggacatcaagtatatcattaaaatctcctatgatacaccaaggaagagaggtattattcggaagatttctcaaaaaatcccacgaagcacgccttcttct 25908077  T
Q  113 accctcgggaaagccataataacctgtaaattgccatttccctttgtttaaatcattaacttctacattgatgtggttattagaataattaagaaccgta 212  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||    
T  25908078 accctcgggaaatccataataacctgtaaattgccatttccctttgtttaaatcattaacttctacattgacgtggttatcagaataattaagaaccata 25908177  T
Q  213 catgcaaaagaagctcgccaaaatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaaagcat 312  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25908178 aatgaaaaagaagctcgccaaaatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaaagcat 25908277  T
Q  313 ctgtcttattagagtgtaccaacgtctcacttaagaagagggcgtccgacttataatagcgaactaaatactttaattttggaactacgctcaggttcac 412  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  25908278 ctgttttattagagtgtaccaacgtctcacttaagaagagggtgtccggcttataatagcgaactaaatactttaattttggaactacgctcaggttcgc 25908377  T
Q  413 taaacctcgacagttccatgctatgatactcattgctctcgacgggcctggtgttcaggtcccg 476  Q
    ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  25908378 taaacctcggcagttccatgctatgatactcattgctcttggcgggcctggtgttcaggtcccg 25908441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 24 - 455
Target Start/End: Original strand, 12072159 - 12072585
Alignment:
Q  24 atatcattaaaatctcctaagatacaccaaggaagagaggtattattcgcaagatttctcaaaaaattccatgaagcacgccttcttctaccctcgggaa 123  Q
    ||||||||||| || ||||| ||||||||||||||||||||||| ||||||| |||||| || |||| |||||||||||| |||||||||||||||||||    
T  12072159 atatcattaaagtcacctaaaatacaccaaggaagagaggtattgttcgcaacatttctaaagaaatcccatgaagcacgtcttcttctaccctcgggaa 12072258  T
Q  124 agccataataacctgtaaattgccatttccctttgtttaaatcattaacttctacattgatgtggttattagaataattaagaaccgtacatgcaaaaga 223  Q
    | |||||||| || || | ||||||||| ||||| || |  |||||||| |||||||||||||| |||  | |||||||||| |    |||  |||||||    
T  12072259 aaccataatatccagttagttgccattttcctttattcatgtcattaacctctacattgatgtgattagcaaaataattaagta---aacaaacaaaaga 12072355  T
Q  224 agctcgccaaaatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaaagcatctgtcttatta 323  Q
       ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||  ||||||| |||||     
T  12072356 gtttcgtcaaaatagtgctaaaccaccacttcgaccattactactaacagaaaaacaattgtcaaagccgagcaaataacgaaattcatctgttttattt 12072455  T
Q  324 gagtgtaccaacgtctcacttaagaagagggcgtccgacttataatagcgaactaaatactttaattttggaactacgctcaggttcactaaacctcgac 423  Q
    ||||| | | |||||||||||||||| |||||||||| ||||||  | |  | |||| | |||| |||||||||||||||||||||| |||   |||| |    
T  12072456 gagtgga-ctacgtctcacttaagaaaagggcgtccggcttatagcaacagattaaaaattttatttttggaactacgctcaggttc-ctaggtctcggc 12072553  T
Q  424 agttccatgctatgatactcattgctctcgac 455  Q
    |||||||||||||||||||||||  |||||||    
T  12072554 agttccatgctatgatactcatttttctcgac 12072585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 53 - 367
Target Start/End: Original strand, 12065465 - 12065782
Alignment:
Q  53 aggaagagaggtattattcgcaagatttctcaaaaaattccatgaagcacgccttcttctaccctcgggaaagccataataacctgtaaattgccatttc 152  Q
    ||||||||||||||| |||| || |||||| || |||| ||||||||| |  |||||||||||||||||||| |||||||| || || | |||||||||     
T  12065465 aggaagagaggtattgttcgaaacatttctaaagaaatcccatgaagcgcctcttcttctaccctcgggaaaaccataatatccagttagttgccatttt 12065564  T
Q  153 cctttgtttaaatcattaacttctacatt---gatgtggttattagaataattaagaaccgtacatgcaaaagaagctcgccaaaatagtgctaatccac 249  Q
    ||||| |||| ||||||||  ||||||||   |||||| |||  |||||||||||| || |||||  |||||||   ||| ||||||| || ||| ||||    
T  12065565 cctttatttagatcattaaactctacattattgatgtgattagaagaataattaagtactgtacaaacaaaagagtttcgtcaaaataatgttaaaccac 12065664  T
Q  250 cacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaaagcatctgtcttattagagtgtaccaacgtctcacttaagaa 349  Q
    |||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||  ||||||| ||||| ||||| || |||||||||| ||||||    
T  12065665 cacttcgaccattactactaacagaaaaacaattgtcaaagccgagcaaataacgaaattcatctgttttatttgagtggactaacgtctcacataagaa 12065764  T
Q  350 gagggcgtccgacttata 367  Q
     |||||||||||||||||    
T  12065765 aagggcgtccgacttata 12065782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 23062976 - 23063170
Alignment:
Q  13 ggacatcaagtatatcattaaaatctcctaagatacaccaaggaagagaggtattattcgcaagatttctcaaaaaattccatgaagcacgccttcttct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  23062976 ggacatcaagtatatcattaaaatctcctaagatacaccaaggaagagaggtattattcgcaagatttctcaaaaaatcccacgaagcacgccttcttct 23063075  T
Q  113 accctcgggaaagccataataacctgtaaattgccatttccctttgtttaaatcattaacttctacattgatgtggttattagaataattaagaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23063076 accctcgggaaagccataataacctgtaaattgccatttccctttgtttaaatcattaacttctacattgatgtggttatcagaataattaagaa 23063170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 272 - 470
Target Start/End: Original strand, 23063167 - 23063365
Alignment:
Q  272 agaaaaacaattatcaaaaccaagcaagtaacgaaaagcatctgtcttattagagtgtaccaacgtctcacttaagaagagggcgtccgacttataatag 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  23063167 agaaaaacaattatcaaaaccaagcaagtaacgaaaagcatctgttttattagagtgtaccaacgtctcacataagaagagggcgtccggcttataatag 23063266  T
Q  372 cgaactaaatactttaattttggaactacgctcaggttcactaaacctcgacagttccatgctatgatactcattgctctcgacgggcctggtgttcag 470  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  23063267 cgaactaaatactttaattttggaactacgctcaggttcgctaaacctcgacagttccatgctatgatactcattgctctcggcgggcctgatgttcag 23063365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 430
Target Start/End: Original strand, 30629737 - 30629917
Alignment:
Q  250 cacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaaagcatctgtcttattagagtgtaccaacgtctcacttaagaa 349  Q
    ||||||||||| ||| ||| |||   ||||||||||||||||||| |||||||| |||  | || ||||| ||||| ||||  || ||||||||    |     
T  30629737 cacttcgaccagtacaacttacaactaaacaattatcaaaaccaaacaagtaacaaaattcttcggtctttttagaatgtattaatgtctcactgggaat 30629836  T
Q  350 gagggcgtccgacttataatagcgaactaaatactttaattttggaactacgctcaggttcactaaacctcgacagttcca 430  Q
     |  || |||||||||||||| || || |  ||||| |||||||||||| ||| |||||||  ||| ||||||||||||||    
T  30629837 taaagcatccgacttataataacggaccatgtacttaaattttggaactgcgcccaggttccttaagcctcgacagttcca 30629917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 307
Target Start/End: Original strand, 12617584 - 12617659
Alignment:
Q  232 aaaatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaa 307  Q
    ||||||||| ||  |||||| ||| ||||||||||||||||   || ||||||||||||||||  |||||||||||    
T  12617584 aaaatagtgttagaccaccagttcaaccattactactaacaactaagcaattatcaaaaccaaataagtaacgaaa 12617659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 12617431 - 12617503
Alignment:
Q  79 ttctcaaaaaattccatgaagcacgccttcttctaccctcgggaaagccataataacctgtaaattgccattt 151  Q
    |||||||| ||| ||| |||||||||||||  |  || || ||||| |||||| |||||||||||||||||||    
T  12617431 ttctcaaacaatcccaagaagcacgccttccacctccttctggaaaaccataagaacctgtaaattgccattt 12617503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 16 - 445
Target Start/End: Complemental strand, 15229093 - 15228673
Alignment:
Q  16 catcaagtatatcattaaaatctcctaagatacaccaaggaagagaggtattattcgcaagatttctcaaaaaattccatgaagcacgccttcttctacc 115  Q
    ||||||| ||||||||||| || ||||| |||||||||||||||||| ||||||||||||||||||| |  |||  ||||||||||||||||||||||||    
T  15229093 catcaagaatatcattaaagtcacctaaaatacaccaaggaagagagctattattcgcaagatttcttaggaaaacccatgaagcacgccttcttctacc 15228994  T
Q  116 ctcgggaaagccataataacctgtaaattgccatttccctttgtttaaatcattaacttctacattgatgtggttattagaataattaagaaccgtacat 215  Q
    |||  |||| ||||||||||| || |||| ||     ||         ||||||||| || ||||||||||| |||  |||||||||||| || |||||     
T  15228993 ctcaagaaaaccataataaccagtgaatttcc-----ccg--------atcattaacctcaacattgatgtgattagcagaataattaagtactgtacaa 15228907  T
Q  216 gcaaaagaagctc-gccaaaatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaaagcatct 314  Q
     ||||||| | || |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  15228906 ccaaaaga-gttctgccaaaatagtgctaagccaccacttcgaccattgctactaacagaaaaacaattatcaaaaccaagcaaataacgaaaaacatct 15228808  T
Q  315 gtcttattagagtgtaccaacgtctcacttaagaagaggg----cgtccgacttataatagcgaactaaatactttaattttggaactacgctcaggttc 410  Q
    || ||||| ||||| || || ||||| || | ||| | ||    ||||||||||||||||||||||||  || |||||||||||||||||||||||||||    
T  15228807 gttttatttgagtggactaatgtctcgctgaggaataaggcgtccgtccgacttataatagcgaactaggtattttaattttggaactacgctcaggttc 15228708  T
Q  411 actaaacctcgacagttccatgctatgatactcat 445  Q
     ||||||||||  |||||||| |||||||||||||    
T  15228707 cctaaacctcggaagttccatcctatgatactcat 15228673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 234 - 446
Target Start/End: Complemental strand, 21114653 - 21114443
Alignment:
Q  234 aatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaaagcatctgtcttattagagtgtacca 333  Q
    |||| |||||| |||||||| ||||| |||||||| |  | ||||||||||||||| ||||| |  ||||||||||||||||| ||||||||  | || |    
T  21114653 aataatgctaagccaccactccgaccgttactactta--gcaaaacaattatcaaacccaagaatataacgaaaagcatctgttttattagaagggacta 21114556  T
Q  334 acgtctcacttaagaagagggcgtccgacttataatagcgaactaaatactttaattttggaactacgctcaggttcactaaacctcgacagttccatgc 433  Q
      |||||||| |  || | |||||||| |||||||||||||||||  || |||||||||||||||||||||| |||| | | |||||| ||||||||| |    
T  21114555 gagtctcactgagaaataaggcgtccggcttataatagcgaactaggtattttaattttggaactacgctcacgttccccagacctcggcagttccatcc 21114456  T
Q  434 tatgatactcatt 446  Q
    ||||||| |||||    
T  21114455 tatgatagtcatt 21114443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 362 - 445
Target Start/End: Complemental strand, 31958444 - 31958361
Alignment:
Q  362 cttataatagcgaactaaatactttaattttggaactacgctcaggttcactaaacctcgacagttccatgctatgatactcat 445  Q
    |||||||||||| |||| ||| |||| |||||||||||||||||||||| ||| ||||||| |||||||| |||| | ||||||    
T  31958444 cttataatagcggactagatattttagttttggaactacgctcaggttccctagacctcgagagttccatcctatcagactcat 31958361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 31959293 - 31959370
Alignment:
Q  227 tcgccaaaatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacg 304  Q
    |||||||||  ||||||| |||||||| ||||||||||||||||   | ||||||||| ||||||||||||| |||||    
T  31959293 tcgccaaaactgtgctaaaccaccactccgaccattactactaatgcataaacaattaacaaaaccaagcaaataacg 31959370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 31958535 - 31958488
Alignment:
Q  260 attactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaa 307  Q
    |||||||| |||||| |||||||||||||| |||||||| ||||||||    
T  31958535 attactaccaacagataaacaattatcaaagccaagcaaataacgaaa 31958488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 446
Target Start/End: Original strand, 14860973 - 14861191
Alignment:
Q  228 cgccaaaatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaaagcatctgtcttattagagt 327  Q
    |||||||| |||||||| |||||||| | ||||||||||||||||   |||| |||||||||||||||||| |||| |||  | ||||| ||||||| ||    
T  14860973 cgccaaaagagtgctaagccaccactccaaccattactactaacaactaaaccattatcaaaaccaagcaaataacaaaattcttctgttttattagcgt 14861072  T
Q  328 gtaccaacgtctcacttaagaagagggcgtccgacttataatagcgaactaaatactttaattttggaactacgctcaggttcactaaacctcgacagtt 427  Q
    | || || ||||||||||| || ||  | ||||||||| ||||||| ||||  || | || |||   ||||||||| ||||||  ||  |||||||||||    
T  14861073 ggactaaagtctcacttaaaaatagaacatccgacttaaaatagcggactaggtattatagtttaaaaactacgcttaggttccttaggcctcgacagtt 14861172  T
Q  428 ccatgctatgatactcatt 446  Q
    |||| |||| | |||||||    
T  14861173 ccatcctataagactcatt 14861191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 30042263 - 30042337
Alignment:
Q  230 ccaaaatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacg 304  Q
    ||||| |||||||||  |||||||||||||||||||| ||||||  ||||| ||||||||| ||||||| |||||    
T  30042263 ccaaagtagtgctaagacaccacttcgaccattactaataacagttaaacatttatcaaaatcaagcaaataacg 30042337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 28243108 - 28243068
Alignment:
Q  16 catcaagtatatcattaaaatctcctaagatacaccaagga 56  Q
    ||||||| |||||||||||||| || |||||||||||||||    
T  28243108 catcaagaatatcattaaaatcaccaaagatacaccaagga 28243068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 16659755 - 16659850
Alignment:
Q  16 catcaagtatatcattaaaatctcctaagatacaccaaggaagagaggtattattcgcaagatttctcaaaaaattccatgaagcacgccttcttc 111  Q
    ||||||| |||||||| || || ||||| |||||||| ||||| |||||||| || |||||||||||||| |||| | | ||||||| ||||||||    
T  16659755 catcaagaatatcattgaagtcgcctaaaatacaccatggaagtgaggtattgtttgcaagatttctcaagaaatcctaggaagcacaccttcttc 16659850  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 6009712 - 6009752
Alignment:
Q  16 catcaagtatatcattaaaatctcctaagatacaccaagga 56  Q
    ||||||| |||||||||||||| || |||||||||||||||    
T  6009712 catcaaggatatcattaaaatcgccaaagatacaccaagga 6009752  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 17783307 - 17783267
Alignment:
Q  16 catcaagtatatcattaaaatctcctaagatacaccaagga 56  Q
    ||||||| |||||||||||||| || |||||||||||||||    
T  17783307 catcaaggatatcattaaaatcgccaaagatacaccaagga 17783267  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 19084826 - 19084786
Alignment:
Q  16 catcaagtatatcattaaaatctcctaagatacaccaagga 56  Q
    ||||||| |||||||||||||| || |||||||||||||||    
T  19084826 catcaaggatatcattaaaatcgccaaagatacaccaagga 19084786  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 19091934 - 19091894
Alignment:
Q  16 catcaagtatatcattaaaatctcctaagatacaccaagga 56  Q
    ||||||| |||||||||||||| || |||||||||||||||    
T  19091934 catcaaggatatcattaaaatcgccaaagatacaccaagga 19091894  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 349
Target Start/End: Original strand, 33033258 - 33033378
Alignment:
Q  229 gccaaaatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaaagcatctgtcttattagagtg 328  Q
    ||||||||||||| ||||||||||| || ||| ||||||| |||  ||| ||||| |||||||||||||  ||||| ||  ||| ||  |||||||||||    
T  33033258 gccaaaatagtgccaatccaccactccggccaatactactcacaacaaagcaattgtcaaaaccaagcatataacggaattcatttgctttattagagtg 33033357  T
Q  329 taccaacgtctcacttaagaa 349  Q
     || || |||||||| |||||    
T  33033358 gactaatgtctcactgaagaa 33033378  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 446
Target Start/End: Original strand, 19060740 - 19060957
Alignment:
Q  229 gccaaaatagtgctaatccaccacttcgaccattactactaacagaaaaacaattatcaaaaccaagcaagtaacgaaaagcatctgtcttattagagtg 328  Q
    ||||||||||||| ||||||||||| || ||| ||||||| |||  ||| | ||| |||||||||||||  ||||| ||  ||| ||  |||||||||||    
T  19060740 gccaaaatagtgccaatccaccactccggccaatactactcacaacaaagcgattgtcaaaaccaagcatataacggaattcatttgctttattagagtg 19060839  T
Q  329 taccaacgtctcacttaagaagagggcgtccgacttataatagcgaactaaatactttaattttggaactacgctcaggttcactaaacctcgacagttc 428  Q
     || || |||||| | |  || |  ||| | | ||||| ||| || | ||  || |||||||| ||||||| |||  ||||| ||||||||||||| |||    
T  19060840 gactaatgtctcattgagaaataaagcggctggcttatgataacggagtatgtattttaatttaggaactatgcttgggttccctaaacctcgacaattc 19060939  T
Q  429 catgctatgatactcatt 446  Q
    ||| |||| |||||||||    
T  19060940 catcctataatactcatt 19060957  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 14502184 - 14502144
Alignment:
Q  16 catcaagtatatcattaaaatctcctaagatacaccaagga 56  Q
    ||||||| |||||||||||||| || |||||||||||||||    
T  14502184 catcaaggatatcattaaaatcgccaaagatacaccaagga 14502144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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