View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_150 (Length: 309)
Name: NF9839A_low_150
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_150 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 23 - 309
Target Start/End: Original strand, 30001096 - 30001381
Alignment:
| Q |
23 |
aagagtatcaattaaaattggctttggagttgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaagcagattagtttggggtcttgtga |
122 |
Q |
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| T |
30001096 |
aagagtatcaattaaaattggctttggagttgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaagcagattagtttggggtcttgtga |
30001195 |
T |
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| Q |
123 |
tcctgataatacaccagctgaaattgtggcatacagatactgggtgagttactttgttcattttaagcacattgactttaggttgaggatattggaactt |
222 |
Q |
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| T |
30001196 |
tcctgataatacaccagctgaaattgtggcatacagatactgggtgagttactttgttcattttaagcacattgactttaggttgaggatattggaactt |
30001295 |
T |
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| Q |
223 |
ggaagatataagtttcaagtttgattgttatgttattcttaaagaaatatgagtcttttagaagtttgtggagaatttcagatgtgt |
309 |
Q |
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| T |
30001296 |
ggaagatat-agtttcaagtttgattgttatgttattcttaaagaaatatgagtcttttagaagtttgcggagaatttcagatgtgt |
30001381 |
T |
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Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 45199237 - 45199361
Alignment:
| Q |
43 |
gctttggagttgagtgcaaaggaggatcctgaagctgtgcagattgaagctgtgaagcagattagtttggggtcttgtgatcctgataatacaccagctg |
142 |
Q |
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||||| ||| ||||||||||||||||||| || ||||| |||||||||||||| ||||| || |||||||| |||||| | ||||||||||||||||||| |
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| T |
45199237 |
gctttagagctgagtgcaaaggaggatcccgaggctgtacagattgaagctgttaagcaaatcagtttgggatcttgtcaccctgataatacaccagctg |
45199336 |
T |
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| Q |
143 |
aaattgtggcatacagatactgggt |
167 |
Q |
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| T |
45199337 |
aagttgtcgcataccgatactgggt |
45199361 |
T |
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