View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_152 (Length: 307)
Name: NF9839A_low_152
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_152 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 13879675 - 13879389
Alignment:
| Q |
21 |
gatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagagattg |
120 |
Q |
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| T |
13879675 |
gatgatgatgatcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagagattg |
13879576 |
T |
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| Q |
121 |
atgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcgactt |
220 |
Q |
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| T |
13879575 |
atgtctgtgttgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcgactt |
13879476 |
T |
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| Q |
221 |
tgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaaggaagaagatgaagatga |
307 |
Q |
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| T |
13879475 |
tgttaacactaaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaaggaagaagacgaagatga |
13879389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 31 - 307
Target Start/End: Complemental strand, 13875448 - 13875172
Alignment:
| Q |
31 |
atcttgttctctgggattttacggagactgaggagtctgtgattttgcggtcgaatcttgtcgctgacaacgtgaggaaggaagagattgatgtctgtgt |
130 |
Q |
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| T |
13875448 |
atcttgttctctgtgattttgaggagaccgaggagtctttgatttttcggttgaatctggtcgccaacaacgtgaggaaggaagagattgatgtctgtgt |
13875349 |
T |
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| Q |
131 |
tgatcacggtactctcaggattgaggatgttcttcccggtcgaaatctgttttcagtaacacttaacttgaaagggaagcactgcgactttgttaacact |
230 |
Q |
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| T |
13875348 |
tgatcacggtactctcaggattaaggatgctcttccaggtcgaaatcgattttcaggtacactcgacttgaaagggaagcatttcgacgttgttaacact |
13875249 |
T |
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| Q |
231 |
aaagccaaaatgatagagaacaatttcattgaagttgtggttcctaagctcaagaacaaggaagaagatgaagatga |
307 |
Q |
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| T |
13875248 |
aaagccaaaatgatagagaacaatttccttgaaattgtggttcccaagctcaacaacaaggaagaagatgaagatga |
13875172 |
T |
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