View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_154 (Length: 307)
Name: NF9839A_low_154
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_154 |
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| [»] scaffold0268 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 7664 - 7966
Alignment:
| Q |
6 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
105 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7664 |
ctgagatgaaaaaagtaatggaggaagagatcgacaccgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
7763 |
T |
|
| Q |
106 |
tttggtcgacgaggaaaacaaagaaaatttgcttgaagtgnnnnnnnn-gtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
204 |
Q |
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| T |
7764 |
tttggcggacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
7863 |
T |
|
| Q |
205 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagcggaaattggttgtgctcatga |
304 |
Q |
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| T |
7864 |
ttagtaaaagaatgtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagctgaaattggttgtgctcatga |
7963 |
T |
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| Q |
305 |
tga |
307 |
Q |
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||| |
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| T |
7964 |
tga |
7966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 22261351 - 22261653
Alignment:
| Q |
6 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
105 |
Q |
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| T |
22261351 |
ctgagatgaaaaaggtaatggaggaagagatcgacactgtgaagaaggaatttgggttggagattttaaaaatgagtaaaatcttagaagctcaagtgca |
22261450 |
T |
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| Q |
106 |
tttggtcgacgaggaaaacaaagaaaatttgcttgaagtgnnnnnnnn-gtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
204 |
Q |
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| T |
22261451 |
tttggccgacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatctggaaattgccatttgtaagaagattgccatggaggagttgttt |
22261550 |
T |
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| Q |
205 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagcggaaattggttgtgctcatga |
304 |
Q |
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| T |
22261551 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagctgaaattggttgtgctcatga |
22261650 |
T |
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| Q |
305 |
tga |
307 |
Q |
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||| |
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| T |
22261651 |
tga |
22261653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 6 - 307
Target Start/End: Complemental strand, 15779400 - 15779098
Alignment:
| Q |
6 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
105 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||| |||||||||||||||||||||||| |
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| T |
15779400 |
ctgagatgaaaaaactaatggaggaagagatcgagactgtgaagaaggaatctgagatggagatatcaaacatgaataaaatcttagaagctcaagtgca |
15779301 |
T |
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| Q |
106 |
tttggtcgacgaggaaaacaaagaaaatttgcttgaagtgnnnnnnnn-gtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
204 |
Q |
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| T |
15779300 |
tttggctgacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatgtggaaattgctagttttaagaagattgccatggaggagttgttt |
15779201 |
T |
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| Q |
205 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagcggaaattggttgtgctcatga |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
15779200 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagagttaggatggtcaaatagttcattgtggaagctgaaattggttgtgcttatga |
15779101 |
T |
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| Q |
305 |
tga |
307 |
Q |
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||| |
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| T |
15779100 |
tga |
15779098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 24034423 - 24034122
Alignment:
| Q |
6 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24034423 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatttggggtggagattttaaaaatgagtaaaatcttagaagctcaagtgca |
24034324 |
T |
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| Q |
106 |
tttggtcgacgaggaaaacaaagaaaatttgcttgaagtgnnnnnnnn-gtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
204 |
Q |
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||||| |||||||||||||||| ||||||||||||||||| |||||| ||||||||| | |||||||||||||| |||||||||||||||| |
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| T |
24034323 |
tttggccgacgaggaaaacaaataaaatttgcttgaagtgaaaaaaaatgtggatctggaaattgccatttgtaagaagattgtcatggaggagttgttt |
24034224 |
T |
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| Q |
205 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagcggaaattggttgtgctcatga |
304 |
Q |
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| T |
24034223 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcattgtggaagctgaaattggttgtgctcatga |
24034124 |
T |
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| Q |
305 |
tg |
306 |
Q |
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|| |
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| T |
24034123 |
tg |
24034122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 7659666 - 7659565
Alignment:
| Q |
44 |
gtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgcatttggtcgacgaggaaaacaaagaaaatttgcttgaag |
143 |
Q |
| |
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||||| |||||||||||||||||||| || || ||| || || ||||||||||||||||| |||||| | ||||||||||||||| || || |||||| |
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| T |
7659666 |
gtgaaaaaggaatctgagatggagatatcaaacttgaaaaacatgttagaagctcaagtgcagttggtccaggaggaaaacaaagaacatatggttgaag |
7659567 |
T |
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| Q |
144 |
tg |
145 |
Q |
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|| |
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| T |
7659566 |
tg |
7659565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 275
Target Start/End: Complemental strand, 17341112 - 17340842
Alignment:
| Q |
6 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatctgagatggagatttccaaaatgagtaaaatcttagaagctcaagtgca |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
17341112 |
ctgagatgaaaaaagtaatggaggaagagatcgacactgtgaagaaggaatttgggatggagattttaaaaatgagtaaaatcttataagctcaagtgca |
17341013 |
T |
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| Q |
106 |
tttggtcgacgaggaaaacaaagaaaatttgcttgaagtg-nnnnnnnngtggatgcggaaattgctagttgtaagaagattgccatggaggagttgttt |
204 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
17341012 |
tttggccgacgaggaaaacaaagaaaatttgcttgaagtgaaaaaaaatgtggatctggaaattgccatttgtaagaagattgccatggaggagttgttt |
17340913 |
T |
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| Q |
205 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtcaaatagttcatt |
275 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
17340912 |
ttagtaaaagaaagtctagatgatgaggtatctttgctgaaggaagaggtaggatggtccaatagttcatt |
17340842 |
T |
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