View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_156 (Length: 306)

Name: NF9839A_low_156
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_156
NF9839A_low_156
[»] chr4 (10 HSPs)
chr4 (1-298)||(5467105-5467399)
chr4 (1-171)||(5355285-5355455)
chr4 (1-165)||(5379621-5379785)
chr4 (1-165)||(5345615-5345779)
chr4 (1-165)||(5422932-5423096)
chr4 (1-160)||(5363759-5363918)
chr4 (1-139)||(5413367-5413505)
chr4 (1-170)||(5357399-5357568)
chr4 (1-139)||(5393918-5394056)
chr4 (1-171)||(5503151-5503321)
[»] chr5 (1 HSPs)
chr5 (1-165)||(20329806-20329970)
[»] chr2 (1 HSPs)
chr2 (22-63)||(14560149-14560190)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 5467399 - 5467105
Alignment:
Q  1 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatgctttacaagttcatccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5467399 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatactttacaagttcatccc 5467300  T
Q  101 ccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgtatccattgatcaaattatgnnnnnnntaa 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||    
T  5467299 ccagcttgattttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgtatccattgatcagattatgaaaaaaataa 5467200  T
Q  201 taatggttttgagttgtactacatgtttgtgtgtatttatttattttttgaataacatgattgtgtgtatttagtattattaatcggtgtttatgatg 298  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||    
T  5467199 taatggttttcagttgtactacatgtttgtgtgtatttatttattttttgaataacatgtttgtgtgtatttagtattattaa---gtgtttatgatg 5467105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 5355285 - 5355455
Alignment:
Q  1 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatgctttacaagttcatccc 100  Q
    |||||||| |||||||||||||||| || ||||||| |||||||||||||||||||||||||| ||||| ||  ||||| |||||||||| |||||||||    
T  5355285 tttttggctttggaattttcatcctcccccttatttgcttgatgaaatggaggttgtggtattccaaacatgcagatgaaatgctttacaggttcatccc 5355384  T
Q  101 ccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgt 171  Q
    |||||| || |||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||    
T  5355385 ccagctagattttgtgtatgaacagcatgaagggaagaggtatagaactctgaggtggaggtactgattgt 5355455  T

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Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 5379621 - 5379785
Alignment:
Q  1 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatgctttacaagttcatccc 100  Q
    |||||||| |||||||||||||||| || |||||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| ||||    
T  5379621 tttttggctttggaattttcatcctcccccttatttggttgatgaaatggaggttgtggtatttcaaacatgtcgatgaaatgctttacaggttcctccc 5379720  T
Q  101 ccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact 165  Q
    |||||| || |||||||||||||| ||  ||||||||||||||||| |||| ||| |||||||||    
T  5379721 ccagctagattttgtgtatgaacagcaggaagggaagaggtatagatctctaaggtggaggtact 5379785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 5345779 - 5345615
Alignment:
Q  1 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatgctttacaagttcatccc 100  Q
    |||||||| ||||||||||| |||| || ||||||| |||||||| ||||||||||||||||| ||||| ||  ||||| |||||||||| |||||||||    
T  5345779 tttttggctttggaattttcctcctcccccttatttgcttgatgagatggaggttgtggtattccaaacatgcagatgaaatgctttacaggttcatccc 5345680  T
Q  101 ccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact 165  Q
    |||||| || |||||||||||||||||| |||||| |||||||||| |||| ||| |||| ||||    
T  5345679 ccagctagattttgtgtatgaacaacatcaagggatgaggtatagatctctaaggtggagatact 5345615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 5423096 - 5422932
Alignment:
Q  1 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatgctttacaagttcatccc 100  Q
    ||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||||||| ||| | ||  ||||| |||||| ||| |||||||||    
T  5423096 tttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattccaatcatgcagatgaaatgcttcacaggttcatccc 5422997  T
Q  101 ccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact 165  Q
    |||||| || |||||||||||||| ||| |||||||||||| |||| |||| ||| |||||||||    
T  5422996 ccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctaaggtggaggtact 5422932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 5363759 - 5363918
Alignment:
Q  1 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatgctttacaagttcatccc 100  Q
    |||||||  |||||||||||||||| || ||||||| |||||||| ||||||||||||||||| ||| | ||  ||||| |||| ||||| ||| |||||    
T  5363759 tttttgggtttggaattttcatcctcccccttatttgcttgatgagatggaggttgtggtattccaagcatgcagatgaaatgcattacaggttgatccc 5363858  T
Q  101 ccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggag 160  Q
    |||||| || |||||||||||||| ||| |||||||||||||||||||||| ||| ||||    
T  5363859 ccagctagattttgtgtatgaacagcatgaagggaagaggtatagaactctaaggtggag 5363918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 5413367 - 5413505
Alignment:
Q  1 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatgctttacaagttcatccc 100  Q
    |||||||| ||||| |||||||||||||| || |||  | || ||||| |||||||||||||| |||||  || ||||| |||||||||| |||||||||    
T  5413367 tttttggctttggagttttcatccttcctgttttttgttggaagaaattgaggttgtggtattccaaacacgtagatgaaatgctttacaggttcatccc 5413466  T
Q  101 ccagcttgactttgtgtatgaacaacataaagggaagag 139  Q
    || ||| || |||||||||||||||||| ||||||||||    
T  5413467 ccggctagattttgtgtatgaacaacatgaagggaagag 5413505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 5357399 - 5357568
Alignment:
Q  1 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatgctttacaagttcatccc 100  Q
    |||| ||| ||||| ||||||| |||||| ||||||| | |   ||||||||||||||||||| ||||| ||| ||||| || ||||||||||||||  |    
T  5357399 ttttcggctttggagttttcattcttcctattattttatggggaaaatggaggttgtggtattccaaacatgtagatgaaattctttacaagttcatatc 5357498  T
Q  101 ccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattg 170  Q
    ||  ||||| |||||||||||||| ||| ||||||||||||| |||||| | ||| |||| |||||||||    
T  5357499 ccgacttgattttgtgtatgaacagcatgaagggaagaggtacagaactttaaggtggagatactgattg 5357568  T

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Target: chr4; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 5393918 - 5394056
Alignment:
Q  1 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatgctttacaagttcatccc 100  Q
    |||||||| ||||| |||||||||||||| || |||  | || ||||| | |||||||||||| |||||  || ||||| |||||||||| |||||||||    
T  5393918 tttttggctttggagttttcatccttcctgttttttgttggaagaaattgcggttgtggtattccaaacacgtagatgaaatgctttacaggttcatccc 5394017  T
Q  101 ccagcttgactttgtgtatgaacaacataaagggaagag 139  Q
    || ||| || |||||||||||||||||| ||||||||||    
T  5394018 ccggctagattttgtgtatgaacaacatgaagggaagag 5394056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 5503151 - 5503321
Alignment:
Q  1 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatgctttacaagttcatccc 100  Q
    |||||||  ||||||||||||| || || ||||||| || || |||||||||| |||||||||  |||| ||| ||||  |||||||||| | |||||||    
T  5503151 tttttggttttggaattttcattctcccccttatttgctggaagaaatggaggctgtggtattctaaacatgtagatgggatgctttacaggatcatccc 5503250  T
Q  101 ccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtactgattgt 171  Q
     || ||||| ||||||| |||||||||| ||||||||||||| | || | ||||| |||| ||||||||||    
T  5503251 tcaacttgattttgtgtttgaacaacatgaagggaagaggtacaaaattttgaggtggagttactgattgt 5503321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 20329806 - 20329970
Alignment:
Q  1 tttttggccttggaattttcatccttcctcttattttcttgatgaaatggaggttgtggtatttcaaacttgtcgatgacatgctttacaagttcatccc 100  Q
    ||||||||||||||||||||||||| || ||| ||| |||||||||||||||||||||||||| ||| | ||  ||||| |||||| ||| |||||||||    
T  20329806 tttttggccttggaattttcatcctcccccttgtttgcttgatgaaatggaggttgtggtattccaatcgtgcagatgaaatgcttcacaggttcatccc 20329905  T
Q  101 ccagcttgactttgtgtatgaacaacataaagggaagaggtatagaactctgaggcggaggtact 165  Q
    |||||| || |||||||||||||| ||| |||||||||||| |||| |||| ||| |||||||||    
T  20329906 ccagctagattttgtgtatgaacagcatgaagggaagaggtgtagatctctaaggtggaggtact 20329970  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 14560149 - 14560190
Alignment:
Q  22 tccttcctcttattttcttgatgaaatggaggttgtggtatt 63  Q
    ||||||||||||||||||||| || ||||||||| |||||||    
T  14560149 tccttcctcttattttcttgaagagatggaggttttggtatt 14560190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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