View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_157 (Length: 303)
Name: NF9839A_low_157
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_157 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 14301269 - 14301566
Alignment:
| Q |
1 |
tcacataccttttccaaatcaaccagaagcttatgacatgccattaccaactgtaatgacttcacagttctcagcatatggaagactaccccacatattt |
100 |
Q |
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| T |
14301269 |
tcacataccttttccaaatcaaccagaagcttatgacatgccattatcaactgtaatgacttcacagtcctcagcatatggaagactaccccacatattt |
14301368 |
T |
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| Q |
101 |
ttctacacaatttaaaatatattcatatactcaatgtagaacacaaaagtgataacaaaattcaatatttttgataaatacaacttgcttatagaggaga |
200 |
Q |
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| T |
14301369 |
ttctacacaatttaaaatatattcatatactcaatgtagaacacaaaagtgataacaaaattcaatatttttgataaatacaacttgcttatagaggaga |
14301468 |
T |
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| Q |
201 |
attaacctatatattcnnnnnnntaaaattttctctcaaaaagtataagcatgtgtgtaatctttgaacctgtagacagactaacacaaacaccaaac |
298 |
Q |
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| T |
14301469 |
attaacctatatattcaaaaaaataaaattttctctcaaaaagtataagcatgtgtgtaatctttgaacctctagacagactgacacaaacaccaaac |
14301566 |
T |
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Back To:
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Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 34633031 - 34633237
Alignment:
| Q |
1 |
tcacataccttttccaaatcaaccagaagcttatgacatgccattaccaactgtaatgacttcacagttctcagcatatggaagactaccccacatattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||| | |||||||||||| ||| |||| |||||||||||||||||| ||||| ||||| |
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| T |
34633031 |
tcacataccttttccaaatcaaccagaagcttataacttgccacaatcaactgtaatgatttctcagtcctcagcatatggaagactgccccaagtattt |
34633130 |
T |
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| Q |
101 |
ttctacacaattt-aaaatatattcatatactcaatgtagaacacaaaagtgataacaaaattcaatatttttgataaatacaacttgcttatagaggag |
199 |
Q |
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| T |
34633131 |
ttctacacaatttaaaaatatatttatatactcaactcagaacacaaaaatgaagacaaaattcaatatttctaacaaatacaacttg-ttatagaggag |
34633229 |
T |
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| Q |
200 |
aattaacc |
207 |
Q |
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|||||||| |
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| T |
34633230 |
aattaacc |
34633237 |
T |
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