View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_158 (Length: 303)
Name: NF9839A_low_158
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_158 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 41680806 - 41681127
Alignment:
| Q |
1 |
atgaaggaaaaacttgcaattgtatttgatttaattaataagaaggtgtaacacaagagcaaaaaggagagtccccttcgagtcaccttgctgcactcca |
100 |
Q |
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| T |
41680806 |
atgaagaaaaaacttgcaattgtatttaatttaattaataagaatgtgtaacacaagagcaaaaaggagagtccccttcaagtcaacttgctgcactcca |
41680905 |
T |
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| Q |
101 |
gtgtctaacataatgtccatccctaaggtataacctcgctgcctaaccataaata-------------------tagatgggcatcctaccctcactttg |
181 |
Q |
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| T |
41680906 |
gtgacttacataatgtccatccgtaaggtataacctcgctgcctaaccataaataaattgaaaccacaaaaaaatagatgggcatcctaccctcactttg |
41681005 |
T |
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| Q |
182 |
cacaatagtgttgacttgtctatacactgaacatagccaaaaaaccacctccatttcacttgatcaacatcttgttggcattgtgaaaattggcatttgc |
281 |
Q |
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| T |
41681006 |
cagaacagtgttgacttgtctatacactgaacatagccaaaaaaccacctccatttcacttgatcaacatcttgttggcattgtgaaaattggcatttgc |
41681105 |
T |
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| Q |
282 |
accacctaacaccctaacacca |
303 |
Q |
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| T |
41681106 |
accacctaataccctgacacca |
41681127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 6251900 - 6251837
Alignment:
| Q |
37 |
aataagaaggtgtaacacaagagcaaaaaggagagtccccttcgagtcaccttgctgcactccag |
101 |
Q |
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| T |
6251900 |
aataagagggtgtaacataagagcaaaaaggagcgt-ccctatgggtcaccttgttgcactccag |
6251837 |
T |
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