View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_16 (Length: 461)
Name: NF9839A_low_16
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 30881592 - 30881835
Alignment:
| Q |
18 |
gacatcaccgggaaagaacttcgatgacaattggggttgctagaaggatttagtttagagcatcgatccccaatctctgctgtaattgtagctaaatatt |
117 |
Q |
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| T |
30881592 |
gacatcaccggaaaagaacttcgatgacaattggggttgctagaaagatttagtttagagcatcgatccccaatctctgctgtaattgtagctaaataat |
30881691 |
T |
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| Q |
118 |
gttgagcttatttccagtgtcatggtgataaatgcatgtataatcaatgtttcgtcaattttttaatttgatcccaaaacaagttttgtggttgttaaga |
217 |
Q |
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| T |
30881692 |
gttgagcttatttccagtgtcgtggtgataaatgcatgtacaatcaatgtttcgtcaattttttaatttgatcccaaaacaagttttgtggttgttaaga |
30881791 |
T |
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| Q |
218 |
acgacgttatattttcctctaataaagaagacattatattttgt |
261 |
Q |
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| T |
30881792 |
acgacgttatattttcctctaataaagaagacattatattttgt |
30881835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 287 - 453
Target Start/End: Original strand, 30881854 - 30882020
Alignment:
| Q |
287 |
ttagatgaaatataggatgaaaatatgtgcttaagcattgggtagttctcaccttaccagttgattttgtaggattgaattagactcaatctaaattcta |
386 |
Q |
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| T |
30881854 |
ttagatgaaatataggatgaaaatatgtgcttaagcattgggtagttctcaccttaccaattgatttcgtaggattgaattagactcgatctaaattcta |
30881953 |
T |
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| Q |
387 |
caatgatttcaaagtctattcaagatccattggatcatcctctattaggccatactctagatgtcca |
453 |
Q |
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| T |
30881954 |
cgatgatttcaaagtctattcaagatccattggatcatcctctattaggccatactctagatgtcca |
30882020 |
T |
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