View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_164 (Length: 298)

Name: NF9839A_low_164
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_164
NF9839A_low_164
[»] scaffold0867 (1 HSPs)
scaffold0867 (15-295)||(2479-2759)
[»] chr6 (2 HSPs)
chr6 (15-266)||(19792153-19792404)
chr6 (211-248)||(8220023-8220060)
[»] chr8 (3 HSPs)
chr8 (15-286)||(9681293-9681564)
chr8 (22-292)||(5190272-5190545)
chr8 (55-243)||(19730771-19730959)
[»] chr4 (3 HSPs)
chr4 (25-295)||(23560909-23561179)
chr4 (26-289)||(48263886-48264151)
chr4 (39-98)||(20216286-20216345)
[»] chr1 (2 HSPs)
chr1 (15-298)||(16680781-16681065)
chr1 (15-136)||(46822716-46822837)
[»] chr5 (1 HSPs)
chr5 (60-257)||(2952450-2952647)
[»] chr7 (1 HSPs)
chr7 (109-242)||(5313311-5313445)


Alignment Details
Target: scaffold0867 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 2759 - 2479
Alignment:
Q  15 atggacatcaggagctcgtccttacataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccatagaatgcg 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2759 atggacatcaggagctcgtccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccaaagaatgcg 2660  T
Q  115 tgccaaattcataagtcttgtgaagcaactgcttcaagcataaccgtgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaat 214  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659 tgccaaatccataagtcttgtgaagcaactgcttcaagcataaccgtgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaat 2560  T
Q  215 ttttccattcccaatgcatacaatcaatactccccaacatacctcgaaaaccgcgggtctcccccatctgcaacaagcgtt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||    
T  2559 ttttccattcccaatgcatacaatcaatactccccaacatacctggaaaaccgcgtgcctcccccatctgcaacaagcgtt 2479  T

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Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 19792153 - 19792404
Alignment:
Q  15 atggacatcaggagctcgtccttacataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccatagaatgcg 114  Q
    |||||| || |||||||| || | |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  19792153 atggacctcgggagctcgcccctgcataacatcgttgaagacatcagattggttcaacacattgatatcgttgtttgaacccgctaccccaaagaatgcg 19792252  T
Q  115 tgccaaattcataagtcttgtgaagcaactgcttcaagcataaccgtgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaat 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19792253 tgccaaatccataagtcttgtgaagcaactgcttcaagcataacagtgggtttaccatgatcacctcgaacatattgccctttccatgcaactgggcaat 19792352  T
Q  215 ttttccattcccaatgcatacaatcaatactccccaacatacctcgaaaacc 266  Q
    |||||||||||||||||||||||||||||||||| | ||||||| |||||||    
T  19792353 ttttccattcccaatgcatacaatcaatactccctagcatacctggaaaacc 19792404  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 8220023 - 8220060
Alignment:
Q  211 caatttttccattcccaatgcatacaatcaatactccc 248  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  8220023 caatttttccactcccaatgcatgcaatcaatactccc 8220060  T

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Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 9681564 - 9681293
Alignment:
Q  15 atggacatcaggagctcgtccttacataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccatagaatgcg 114  Q
    |||||| ||||||||||| || | |||||||| |||||||||||||| |||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  9681564 atggacctcaggagctcgcccctgcataacattgttgaagacatcaggttggttcaacacattgatatcgttgtttgaacccgctaccccaaagaatgcg 9681465  T
Q  115 tgccaaattcataagtcttgtgaagcaactgcttcaagcataaccgtgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaat 214  Q
    |||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  9681464 tgccaaatccataggtcttgtgaagcaactgcttcaagcataacagtgggtttaccatgatcacctcgaacatattgcccttttcatgcaactgggcaat 9681365  T
Q  215 ttttccattcccaatgcatacaatcaatactccccaacatacctcgaaaaccgcgggtctcccccatctgca 286  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||||||| || | ||||||||||||||    
T  9681364 ttttccattcccaatgcatacaatcaatactccctagcatacctggaaaaccacgtgcctcccccatctgca 9681293  T

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Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 22 - 292
Target Start/End: Complemental strand, 5190545 - 5190272
Alignment:
Q  22 tcaggagctcgtccttacataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccatagaatgcgtgccaaa 121  Q
    |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||||    
T  5190545 tcagcagctcgcccttgcataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctactccaaa-aatgtgtgccaaa 5190447  T
Q  122 ttcataagtcttgtgaagcaactgcttcaagcataaccgtgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaatttttcca 221  Q
    | |||||||||||||||||  |||||||||||||||  |||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||    
T  5190446 tccataagtcttgtgaagcggctgcttcaagcataattgtgggtttaccatgatcaccgcgaacatattgctctttcaatgcaactgggaaatttgtcca 5190347  T
Q  222 ttccc----aatgcatacaatcaatactccccaacatacctcgaaaaccgcgggtctcccccatctgcaacaagc 292  Q
     ||||    |||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||||||||    
T  5190346 atcccaattaatgcatacaatcaatactccccaacatacctggaaaaccacgtgcctcccccatctgcaacaagc 5190272  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 19730771 - 19730959
Alignment:
Q  55 acatcagattggttaagcacattgatatcgttgtttgaacccgctaccccatagaatgcgtgccaaattcataagtcttgtgaagcaactgcttcaagca 154  Q
    |||| ||||||||| | |||||| || || ||||||||||| || |  ||| | | ||| |||||||| || ||||||||||| || | |||||||||||    
T  19730771 acattagattggtttaacacattaatgtcattgtttgaacctgcaataccaaaaagtgcatgccaaatccacaagtcttgtgatgccattgcttcaagca 19730870  T
Q  155 taaccgtgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaatttttccattcccaatgcatacaatcaata 243  Q
    | | ||| ||||||||||| || |||||   | |||| |||||| | ||||| || |||||||||||||||||||||||||||||||||    
T  19730871 tgatcgttggtttaccatggtcgcctcggcaaaattggcctttccaagcaaccggacaatttttccattcccaatgcatacaatcaata 19730959  T

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Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 25 - 295
Target Start/End: Original strand, 23560909 - 23561179
Alignment:
Q  25 ggagctcgtccttacataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccatagaatgcgtgccaaattc 124  Q
    |||||||| |||| ||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||| ||||||| |||||||| |    
T  23560909 ggagctcgcccttgcataacatcattgaagacatcagattggttcaacacgttgatatcgttgtttgaaccagctaccccaaagaatgcatgccaaatcc 23561008  T
Q  125 ataagtcttgtgaagcaactgcttcaagcataaccgtgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaatttttccattc 224  Q
    ||| |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||    
T  23561009 ataggtcttgtgaagcaattgcctcaagcataacagtgggtttaccatgatcacctcgaacatactgccctttcattgcgactggacaatttttccattc 23561108  T
Q  225 ccaatgcatacaatcaatactccccaacatacctcgaaaaccgcgggtctcccccatctgcaacaagcgtt 295  Q
    ||||||||||||||||||||| |||||||||||| ||||||| || | ||||||||||||||||| |||||    
T  23561109 ccaatgcatacaatcaatactacccaacatacctggaaaaccacgtgcctcccccatctgcaacaggcgtt 23561179  T

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Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 26 - 289
Target Start/End: Original strand, 48263886 - 48264151
Alignment:
Q  26 gagctcgtccttacataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccatagaatgcgtgccaaattca 125  Q
    ||||||| |||| || |||||| |||||||||||||||||||| | | | ||||| |||||||||||||| ||||||||| ||||||| |||||||| ||    
T  48263886 gagctcgcccttgcacaacatcattgaagacatcagattggttcaacccgttgatttcgttgtttgaaccggctaccccaaagaatgcatgccaaatcca 48263985  T
Q  126 taa--gtcttgtgaagcaactgcttcaagcataaccgtgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaatttttccatt 223  Q
    ||   |||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  48263986 tagaggtcttgtgaagcaattgcctcaagcataacagtgggtttaccatgatcacctcgaacatactgccctttcaatgcgactggacaatttttccatt 48264085  T
Q  224 cccaatgcatacaatcaatactccccaacatacctcgaaaaccgcgggtctcccccatctgcaaca 289  Q
    ||| |||||||||||||||||| |||||||||| | ||||||| || | |||||||||||||||||    
T  48264086 cccgatgcatacaatcaatactacccaacatacttggaaaaccacgtgcctcccccatctgcaaca 48264151  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 20216345 - 20216286
Alignment:
Q  39 cataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgc 98  Q
    |||||||| |||||| |||| ||||||||  |  ||||||||||||||||||||||||||    
T  20216345 cataacattgttgaatacattagattggtgcataacattgatatcgttgtttgaacccgc 20216286  T

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Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 298
Target Start/End: Original strand, 16680781 - 16681065
Alignment:
Q  15 atggacatcaggagctcgtccttacataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccatagaatgcg 114  Q
    |||||| ||||||||||| |||| |||| |||||||||||| |||| ||||||| |||||||||||||| || ||||||| |||||||||| ||| ||||    
T  16680781 atggacgtcaggagctcgcccttgcataccatcgttgaagaaatcatattggttcagcacattgatatcattttttgaactcgctaccccaaagattgcg 16680880  T
Q  115 tgccaaattcataagtcttgtgaagcaactgcttcaagcataaccgtgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaat 214  Q
    |||||||| ||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  16680881 tgccaaatccataattcttgtgaagcaactgcttcaagcataatagtgggtttaccatgatcacctcaaacatttttccctttcaatgcaactgggcaat 16680980  T
Q  215 ttttccattccc-aatgcatacaatcaatactccccaacatacctcgaaaaccgcgggtctcccccatctgcaacaagcgtttga 298  Q
    |||| ||||||| |||||||||||||||||||||||||| ||||| ||||||| || | |||||||||||||| |||| ||||||    
T  16680981 tttttcattcccaaatgcatacaatcaatactccccaacgtacctggaaaaccacgtgcctcccccatctgcagcaagagtttga 16681065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 136
Target Start/End: Complemental strand, 46822837 - 46822716
Alignment:
Q  15 atggacatcaggagctcgtccttacataacatcgttgaagacatcagattggttaagcacattgatatcgttgtttgaacccgctaccccatagaatgcg 114  Q
    |||||| ||||||||||| || | |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||    
T  46822837 atggacctcaggagctcgcccctgcataacattgttgaagacatcagattggttcaacacattgatatcgttgtttgaacccgctaccccaaagaatgcg 46822738  T
Q  115 tgccaaattcataagtcttgtg 136  Q
    |||||||| |||| ||||||||    
T  46822737 tgccaaatccataggtcttgtg 46822716  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 257
Target Start/End: Original strand, 2952450 - 2952647
Alignment:
Q  60 agattggttaagcacattgatatcgttgtttgaacccgctaccccatagaatgcgtgccaaattcataagtcttgtgaagcaactgc-ttcaagcataac 158  Q
    ||||||||| ||||   ||||||  ||||||||||||||||| ||| |||||| || |||||||||||||||||||||||| ||| | ||| | ||||||    
T  2952450 agattggttcagcatcctgatatttttgtttgaacccgctactccaaagaatgtgtaccaaattcataagtcttgtgaagccactactttcgaacataac 2952549  T
Q  159 cgtgggtttaccatgatcacctcgaacatattgccctttcaatgcaactgggcaatttttccattcccaatgcatacaatcaatactccccaacatacc 257  Q
      |||||||| ||| |||||||  | |||||||||||||| ||  ||   | |||| ||| |||||| ||||||||||||||||||||||  |||||||    
T  2952550 tttgggtttagcat-atcaccttaagcatattgccctttcgatctaaggagacaatattttcattcctaatgcatacaatcaatactccctcacatacc 2952647  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 242
Target Start/End: Original strand, 5313311 - 5313445
Alignment:
Q  109 aatgcgtgccaaattcataagtcttgtgaagcaactgcttcaagcataaccgtggg-tttaccatgatcacctcgaacatattgccctttcaatgcaact 207  Q
    ||||| || ||||| || ||||||||||| ||  ||||||||||||| | |||||| |||||||||||||||||||  | | || | | || | |||||     
T  5313311 aatgcatgtcaaatccacaagtcttgtgatgccgctgcttcaagcatgatcgtgggttttaccatgatcacctcgacaaaactggcatgtccaagcaacc 5313410  T
Q  208 gggcaatttttccattcccaatgcatacaatcaat 242  Q
     |||| | |||||||||||||||||||||||||||    
T  5313411 aggcactatttccattcccaatgcatacaatcaat 5313445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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