View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_165 (Length: 298)
Name: NF9839A_low_165
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_165 |
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| [»] scaffold0602 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 8636456 - 8636567
Alignment:
| Q |
7 |
tttcgtgttgacaaagtgatagaactagttaaacataagcatgtaaatgacgttcctcaatattttatttttaaagtacttaacatgaatgatttttaga |
106 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8636456 |
tttcctgttgacaaagtgatagaactagttaaaaataagcatgtaaatgacgttcctcaatattttatttttaaagcacttaacatgaatgatttttaga |
8636555 |
T |
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| Q |
107 |
cacgtttagatt |
118 |
Q |
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||| |||||||| |
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| T |
8636556 |
cacatttagatt |
8636567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 8627762 - 8627678
Alignment:
| Q |
7 |
tttcgtgttgacaaagtgatagaactagttaaacataagcatgtaaatgacgttcctcaatattttatttttaaagtacttaaca |
91 |
Q |
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| T |
8627762 |
tttcctgttgacaaagtgatagaactagttaaaaataagcatgtaaatgacgttcctcaatattttatttttaaagtacttaaca |
8627678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 184 - 298
Target Start/End: Original strand, 8636633 - 8636747
Alignment:
| Q |
184 |
gatattgttaataagaaatcagttgctaaattgatgcatacctcaattatnnnnnnncaccttattgaatcgtttaggttcccaaacaaagggtaataca |
283 |
Q |
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| T |
8636633 |
gatattgttaataagaaatcagttgctaaattgatgcatacctcagatataaaaatactccttattgaatcgtttaggttcccagccaaagggtaataca |
8636732 |
T |
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| Q |
284 |
actctcctcttttga |
298 |
Q |
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| T |
8636733 |
actctcctcttttga |
8636747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 8622419 - 8622306
Alignment:
| Q |
185 |
atattgttaataagaaatcagttgctaaattgatgcatacctcaattatnnnnnnncaccttattgaatcgtttaggttcccaaacaaagggtaatacaa |
284 |
Q |
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| T |
8622419 |
atattgttaataagaaatcagtttctaaattgatgcatacctcaaatataaaaatatcccctattgtattgtttaggctcccaaccaaagggtaatacaa |
8622320 |
T |
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| Q |
285 |
ctctcctcttttga |
298 |
Q |
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| T |
8622319 |
ctctcctcttttga |
8622306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 8622536 - 8622486
Alignment:
| Q |
68 |
attttatttttaaagtacttaacatgaatgatttttagacacgtttagatt |
118 |
Q |
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| T |
8622536 |
attttatttttaaagtactcaacataaatgatttttagacacatttagatt |
8622486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 8622613 - 8622571
Alignment:
| Q |
12 |
tgttgacaaagtgatagaactagttaaacataagcatgtaaat |
54 |
Q |
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| T |
8622613 |
tgttgacaaagtgatagaactagttaaaaataagcatgtaaat |
8622571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0602
Description:
Target: scaffold0602; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 185 - 298
Target Start/End: Original strand, 2027 - 2140
Alignment:
| Q |
185 |
atattgttaataagaaatcagttgctaaattgatgcatacctcaattatnnnnnnncaccttattgaatcgtttaggttcccaaacaaagggtaatacaa |
284 |
Q |
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| T |
2027 |
atattgttaataagaaatcagtttctaaattgatgcatacctcaaatataaaaatatcccctattgtattgtttaggctcccaaccaaagggtaatacaa |
2126 |
T |
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| Q |
285 |
ctctcctcttttga |
298 |
Q |
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| T |
2127 |
ctctcctcttttga |
2140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 1910 - 1960
Alignment:
| Q |
68 |
attttatttttaaagtacttaacatgaatgatttttagacacgtttagatt |
118 |
Q |
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| T |
1910 |
attttatttttaaagtactcaacataaatgatttttagacacatttagatt |
1960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 37290238 - 37290280
Alignment:
| Q |
12 |
tgttgacaaagtgatagaactagttaaacataagcatgtaaat |
54 |
Q |
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| T |
37290238 |
tgttgacaaagtgatagaactagttaaaaataagcatgtaaat |
37290280 |
T |
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