View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_166 (Length: 297)
Name: NF9839A_low_166
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_166 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 40342782 - 40342493
Alignment:
| Q |
8 |
ttggtgtttggatgataagaagaaattctatgggggagacaccattaacattgtagacatagctcttggatcttttgtcaaatttattgagattcaagaa |
107 |
Q |
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| T |
40342782 |
ttggtgtttggatgataagaagaaattatatgggggagacaccattaacattgtagacatagctcttggatcttttgtcaaatttattgagattcaagaa |
40342683 |
T |
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| Q |
108 |
gatatgtttgaagtgaaggtcttgcaaagtgagaggttccctcgcttacatttatggtttaataattttaaagatgttccagtcataaaaggaaacaccc |
207 |
Q |
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| T |
40342682 |
gatatgtttgaagtgaaggtcttgcaaagtgagaggttccctcgcttacatttatggtttaataattttaaagatgttccagtcataaaaggaaacaccc |
40342583 |
T |
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| Q |
208 |
ctggtcaagagaagttggtggcttttggaaagtgccttattgaaaaaatattggtatctttttgagaaaattatggcctctatgaattga |
297 |
Q |
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| T |
40342582 |
ctggtcaagagaagttggtggcttttggaaagtgccttattgaaaaaatattggtatctttttgagaaaattatggcttctatgaattga |
40342493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 40337507 - 40337285
Alignment:
| Q |
11 |
gtgtttggatgataagaagaaattctatgggggagacaccattaacattgtagacatagctcttggatcttttgtcaaatttattgagattcaagaagat |
110 |
Q |
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| T |
40337507 |
gtgtttggatgatcagaagaaattctatgggggagacaccattagcattgtagacataactcttggatcttttgtgaaatttattgaagttcaggaagat |
40337408 |
T |
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| Q |
111 |
atgtttgaagtgaaggtcttgcaaagtgagaggttccctcgcttacatttatggtttaataattttaaagatgttccagtcataaaaggaaacacccctg |
210 |
Q |
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| T |
40337407 |
atatttggagagaaaatcttgcaaagtgaaaggttccctcgattgcatttatggtttaataatttcaaggattttccagtcatcaaagaaaacacccctg |
40337308 |
T |
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| Q |
211 |
gtcaagagaagttggtggctttt |
233 |
Q |
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| T |
40337307 |
atcaagagaagttggtggctttt |
40337285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 40325583 - 40325365
Alignment:
| Q |
11 |
gtgtttggatgataagaagaaattctatgggggagacaccattaacattgtagacatagctcttggatcttttgtcaaatttattgagattcaagaagat |
110 |
Q |
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| T |
40325583 |
gtgtttggatgatcggaagacattttatgggggagacaccattaacattgtagacatagctcttggatcttttatcaaatttattgaggttcaggaagat |
40325484 |
T |
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| Q |
111 |
atgtttgaagtgaaggtcttgcaaagtgagaggttccctcgcttacatttatggtttaataattttaaagatgttccagtcataaaaggaaacacccctg |
210 |
Q |
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| T |
40325483 |
atgtttaaagtgaagatcttgcaaagtgagagatttccccgattgcatttatggtttaataattttaaggatgctcccgtcatcaaagaaaacacccctg |
40325384 |
T |
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| Q |
211 |
gtcaagagaagttggtggc |
229 |
Q |
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| T |
40325383 |
accaagagaagttggtggc |
40325365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 295
Target Start/End: Complemental strand, 40330061 - 40329781
Alignment:
| Q |
15 |
ttggatgataagaagaaattctatgggggagacaccattaacattgtagacatagctcttggatcttttgtcaaatttattgagattcaagaagatatgt |
114 |
Q |
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| T |
40330061 |
ttggatgatcataataagttctatgggggagaaaccattaacattgtagacatagctcttggatcctttgtcaaatttattgaggttcaagaagatatgt |
40329962 |
T |
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| Q |
115 |
ttgaagtgaaggtcttgcaaagtgagaggttccctcgcttacatttatggtttaataattttaaagatgttccagtcataaaaggaaacacccctggtca |
214 |
Q |
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| T |
40329961 |
ttgaagtgaagatcttaaaaagtgagagattcccccgtttgcatttatggtttaataatttcaaggatgttccaatcatcaaagaaaacacccctgagca |
40329862 |
T |
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| Q |
215 |
agagaagttggtggcttttggaaagtgccttattgaaaaaatattggtatctttttgagaaaattatggcctctatgaatt |
295 |
Q |
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| T |
40329861 |
agagaagtttgtggcttatgtaaggcctctaattgaaaaaataatggcatcttcttaagaaaactatgacttttatgaatt |
40329781 |
T |
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