View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_17 (Length: 458)
Name: NF9839A_low_17
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 318 - 450
Target Start/End: Original strand, 49156210 - 49156342
Alignment:
| Q |
318 |
agatatttacactgatgggagaaccggtgttaagaacacgccatccacgaacaacaccttcagtagcatccatagcaatcgttctcacaacaccttcacc |
417 |
Q |
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| T |
49156210 |
agatatttacactgatgggagaaccggtgttaagaacacgccatccacgaacaacaccttcagtagcatccatagcaatcgttctcacaacaccttcacc |
49156309 |
T |
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| Q |
418 |
caaatgctgagcaacttccaacaccaaactcga |
450 |
Q |
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| T |
49156310 |
caaatgctgagcaacttccaacaccaatctcga |
49156342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 49156030 - 49156143
Alignment:
| Q |
138 |
tcaagagaatcaaatcttaatgaattacggaaatacataatgaggaaaaacacatatagatccatgaaacgcaacttaaaattcaaaccgcaatgatttc |
237 |
Q |
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| T |
49156030 |
tcaagagaatcaaatcttaatgaattacgtaattacataatgaggaaaaacacatctagatccatgaaacgcaacttaaaattcaaaccgcaatgatttc |
49156129 |
T |
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| Q |
238 |
aaaatcagatctca |
251 |
Q |
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| T |
49156130 |
aaaatcagatctca |
49156143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 49155895 - 49155994
Alignment:
| Q |
1 |
tcattattcatccaattgatagcaggatgcagacaaccaatagctcataacactaaatacatttcttccaataattataaagcatcaaactcagcatcca |
100 |
Q |
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| T |
49155895 |
tcattattcatccaattgatagcaggatgcagacaaccaatagctcataacactaaatccatttcttccaataattataaagcatcaaactcagcatcca |
49155994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 321 - 444
Target Start/End: Original strand, 49160388 - 49160511
Alignment:
| Q |
321 |
tatttacactgatgggagaaccggtgttaagaacacgccatccacgaacaacaccttcagtagcatccatagcaatcgttctcacaacaccttcacccaa |
420 |
Q |
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| T |
49160388 |
tatttacactgataggggagccggtgttgagaacacgccaccctctaacaactccttcagtggcatccatagcaatagttctcacaacaccttcacccat |
49160487 |
T |
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| Q |
421 |
atgctgagcaacttccaacaccaa |
444 |
Q |
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| T |
49160488 |
atgttgtgcaacctccaacaccaa |
49160511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 368 - 450
Target Start/End: Original strand, 45639271 - 45639353
Alignment:
| Q |
368 |
acaacaccttcagtagcatccatagcaatcgttctcacaacaccttcacccaaatgctgagcaacttccaacaccaaactcga |
450 |
Q |
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| T |
45639271 |
acaacaccttcagtagcatccatagcaatggttctcacaacaccttcacccaaatgctgagtcagttccaacaccaatctcga |
45639353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 39266032 - 39266089
Alignment:
| Q |
35 |
aaccaatagctcataacactaaatacatttcttccaataattataaagcatcaaactc |
92 |
Q |
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| T |
39266032 |
aacctatagttcataacactaaattcatctcttccaacaattataaagcatcaaactc |
39266089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 423
Target Start/End: Original strand, 6619292 - 6619344
Alignment:
| Q |
371 |
acaccttcagtagcatccatagcaatcgttctcacaacaccttcacccaaatg |
423 |
Q |
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| T |
6619292 |
acaccttcattagcatccatatcaattgttctcattacaccttcacgcaaatg |
6619344 |
T |
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