View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_170 (Length: 295)

Name: NF9839A_low_170
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_170
NF9839A_low_170
[»] scaffold0189 (2 HSPs)
scaffold0189 (16-155)||(30636-30775)
scaffold0189 (241-295)||(30496-30550)


Alignment Details
Target: scaffold0189 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 30775 - 30636
Alignment:
Q  16 acatcaaaatacacctgtaattaacacacatgcagttgtgttatttgaactataaaatacaaacaccacctatgtgtttatttccagctctactactatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30775 acatcaaaatacacctgtaattaacacacatgcagttgtgttatttgaactataaaatacaaacaccacctatgtgtttatttccagctctactactatt 30676  T
Q  116 tacacacaaaaaccaaaagacacccaagtaattttcaagt 155  Q
    || |||||||||||||||||||||||||||||||||||||    
T  30675 taaacacaaaaaccaaaagacacccaagtaattttcaagt 30636  T

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Target: scaffold0189; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 30550 - 30496
Alignment:
Q  241 tttataaaatgagcaacctgaagttaaacaccaactttaactttggaagcataag 295  Q
    ||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  30550 tttataaaatgagtaacctgaagttgaacatcaactttaactttggaagcataag 30496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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