View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_171 (Length: 295)
Name: NF9839A_low_171
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_171 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 27608508 - 27608210
Alignment:
| Q |
1 |
tcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattgtagnnnnnnn-atgcaaaaggaaactatgctg-- |
97 |
Q |
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| T |
27608508 |
tcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattgtagttttatttatgcaaaaggaaactatgctgct |
27608409 |
T |
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| Q |
98 |
-gttacatccttctaggaaaaaccaattttcattggattttccctttgccggttgaattaatacatgtaattcttcnnnnnnntcagatggtaacattgc |
196 |
Q |
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| T |
27608408 |
ggttacatccttctaggaaaaaccaattttcattggattttccctttgccggttgaattaatacatgtaattcttcaaaaaaatcagatggtaacattgc |
27608309 |
T |
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| Q |
197 |
agatgtctgtgttccttgaaaaatatatgtatttatttatattatccattgcactatgaaactgggggctttttgttgtacgtattttcctcttctttg |
295 |
Q |
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| T |
27608308 |
agatgtctgtgttccttgaaaaatatatgtatttatttatattatccattgcactatgaaactgggggctttttgttgtacgtattttcctcttctttg |
27608210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 34496960 - 34496666
Alignment:
| Q |
1 |
tcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattgtagnnnnnnnatgcaaaaggaaactatgctggtt |
100 |
Q |
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| T |
34496960 |
tcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattgtagtttttttatgcaaaaggaaactatgttggtt |
34496861 |
T |
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| Q |
101 |
acatccttctaggaaaaaccaattttcattggattttccctttgccggttgaattaatacatgtaattcttcnnnnnnntcagatggtaacattgcagat |
200 |
Q |
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| T |
34496860 |
acatccttctaggaaaaactaattttcattggattttccctttgctggttgaattaatacatgtaattcttcaaaaaaatccaatggtaacattgcagat |
34496761 |
T |
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| Q |
201 |
gtctgtgttccttgaaaaatatatgtatttatttatattatccattgcactatgaaactgggggctttttgttgtacgtattttcctcttctttg |
295 |
Q |
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| T |
34496760 |
gtctgtgttccttgaaaaatatatgtatttatttatattatccattgcactatgaaactgggggctttttgttgtacgtattttcctcttctttg |
34496666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 31505749 - 31506034
Alignment:
| Q |
1 |
tcagctcaacggtgagaacatttccttgttatctagtgttaattgatgctttaaactattctattgtagnnnnnnnatgcaaaaggaaactatgctggtt |
100 |
Q |
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| T |
31505749 |
tcagctcaacggtgagaacatttccttgttacctagtgttaattgatgctttaaactattctattgtagtctgtt-atgcaaaaggcaactatgctggtt |
31505847 |
T |
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| Q |
101 |
acatccttctaggaaaaaccaattttcattggattttccctttgccggttgaattaatacatgtaattcttcnnnnnnntcagatggtaacattgcagat |
200 |
Q |
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| T |
31505848 |
acatccttctag-aaaaaccaattttcatttgattttccctttgtcggttgaattgatacacgtgattctt-ggtaaaatcagatggtaacattgcagat |
31505945 |
T |
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| Q |
201 |
gtctgtgttccttgaaaaatatatgtatttatttatattatccattgcactatgaaactgggggctttttgttgtacgtattttcctcttct |
292 |
Q |
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| T |
31505946 |
gtctgtgttccttgaaaaaaatatgtatttatat---ttatccattgcactatgaaattggcggctttttgttgtatgtatttttctcttct |
31506034 |
T |
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