View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_172 (Length: 295)

Name: NF9839A_low_172
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_172
NF9839A_low_172
[»] chr1 (1 HSPs)
chr1 (9-295)||(44683506-44683792)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 44683792 - 44683506
Alignment:
Q  9 aattctatgataccaatgtattcttctattttaacaaaatatttgttgtttttagaacactaggttgagtctgattcaaccttacaaaatcgatttttaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | |||||||||||||||||||||||||||    
T  44683792 aattctatgataccaatgtattcttctattttaacaaaatatttgttgtttttagaacattaggttcagtttaattcaaccttacaaaatcgatttttaa 44683693  T
Q  109 ggtgaaaaatgtcatcctttacattacttacgaaaaacattttcatataggaaaaagtattaacacaactaattgaatgaaacttattcaaatttaattg 208  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44683692 ggtgaaaaatgtcctcctttacattactcacgaaaaacattttcatataggaaaaagtattaacacaactaattgaatgaaacttattcaaatttaattg 44683593  T
Q  209 aaaactatgattatgtagaattcttccctcaagcaaggcttcgtgtttaatttaaggatataccgtaaatgaatgattacttgattt 295  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44683592 aaaactatgattatgtagaattcttaactcaagcaaggcttcgtgtttaatttaagaatataccgtaaatgaatgattacttgattt 44683506  T

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