View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_175 (Length: 294)
Name: NF9839A_low_175
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_175 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 9584470 - 9584177
Alignment:
| Q |
1 |
acttgaatggagctcatgttcatgtatgagtcannnnnnnnnnaaatgaatttttaatttaccaaaataaagataattaatgagactcatctaataaata |
100 |
Q |
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| T |
9584470 |
acttgaatggagctcatgttcatgtatgagtcattttttt---aaatgaatttttaatttaccaaaataaagataattaatgagactcatctaataaata |
9584374 |
T |
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| Q |
101 |
annnnnnnnnn------aataaacgaaacaactaatgtcattagaaactcatacacacaagttaaaaagtcagagttcgaatcccgatcatcatgttc-- |
192 |
Q |
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| T |
9584373 |
tttattttattttttttaataaacaaaacaacaaatgtcattagaaactcatacgcacaagttaaaaagtcagagttcgaatcccgatcatcatgttcaa |
9584274 |
T |
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| Q |
193 |
---aacaactttgacattttaccggttgaaattttattttt-gtcggatgtgtgggtaggtggggtgtccttagaaaaagatttagtagattgtttg |
285 |
Q |
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| T |
9584273 |
cctaacaactttgacattttaccagttgaaattttatttttggtcggatgtgtgggtaggtggggtgtccttagagaaagatttagtagattgtttg |
9584177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 27100447 - 27100382
Alignment:
| Q |
222 |
tttatttttg-tcggatgtgtgggtaggtggggtgtcctt-agaaaaagatttagtagattgtttg |
285 |
Q |
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| T |
27100447 |
tttatttttggtcggatgcgtgggttggtggggtgtcctttagagaaagatttagtagattgtttg |
27100382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 3927422 - 3927357
Alignment:
| Q |
222 |
tttatttttg-tcggatgtgtgggtaggtggggtgtcc-ttagaaaaagatttagtagattgtttg |
285 |
Q |
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| T |
3927422 |
tttatttttggtcggatgtgtgggttggcggggtgtcccttagagatagatttagtagattgtttg |
3927357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 42456970 - 42457024
Alignment:
| Q |
222 |
tttatttttg-tcggatgtgtgggtaggtggggtgtc-cttagaaaaagatttag |
274 |
Q |
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| T |
42456970 |
tttatttttggtcggatgtgtgggttggtggggtgtctcttagagaaagatttag |
42457024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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