View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_176 (Length: 293)
Name: NF9839A_low_176
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_176 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 32854175 - 32853883
Alignment:
| Q |
1 |
tcaaattaaaagttgtggagaacaagttccagaaaggaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgttgttgctgttatt |
100 |
Q |
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| T |
32854175 |
tcaaattaaaagttgtggagaacaagttccagaaaggaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgttgttgctgttatt |
32854076 |
T |
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| Q |
101 |
gaagaaacaaaggacctcacaaaactctcacaatatgaattgatgggttccttagaagctcatgaggaaagagtgaatagatacaacaatcagccattgg |
200 |
Q |
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| T |
32854075 |
gaagaaacaaaggacctcacaaaactctcacaatatgaactgatgggttccttagaagctcatgaggaaagagtgaatagatacaacaatcagccattgg |
32853976 |
T |
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| Q |
201 |
agaatgtttttcaagcaaagatgaatatccggagttccaattcgcggcaagaaggaagtggggactcatttcgtggacatccttccaacagag |
293 |
Q |
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| T |
32853975 |
agaatgtttttcaagcaaagatgaatatccggagttccaactcgcgacaagaaggaagtggggactcatttcgtggacatccttccaacagag |
32853883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 37177310 - 37177021
Alignment:
| Q |
1 |
tcaaattaaaagttgtggagaacaagttccagaaaggaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgttgttgctgttatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37177310 |
tcaaattaaaagttgtggagaacaagttccagaaaagaaagtggttgagaaaatattgagaagccttccacaaaaatttgaacatgttgttgctgttatt |
37177211 |
T |
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| Q |
101 |
gaagaaacaaaggacctcacaaaactctcacaatatgaattgatgggttccttagaagctcatgaggaaagagtgaatagatacaacaatcagccattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37177210 |
gaagaaacaaaggacctcacaaaactctcacaatataaattgatgggttccttagaagctcatgaggaaagagtgaatagatacaacaatcagccattgg |
37177111 |
T |
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| Q |
201 |
agaatgtttttcaagcaaagatgaatatccggagttccaattcgcggcaagaaggaagtggggactcatttcgtggacatccttccaaca |
290 |
Q |
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| T |
37177110 |
agaatgtttttcaagcaaagatgaatatccggagttccaactcgcgacaagaaggaagtggggactcatttcgtggacatccttccaaca |
37177021 |
T |
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