View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_180 (Length: 291)

Name: NF9839A_low_180
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_180
NF9839A_low_180
[»] chr4 (2 HSPs)
chr4 (23-276)||(31954065-31954324)
chr4 (177-224)||(1062079-1062127)
[»] chr6 (4 HSPs)
chr6 (184-228)||(25571864-25571908)
chr6 (184-228)||(26006332-26006376)
chr6 (190-228)||(26125103-26125141)
chr6 (179-228)||(18575111-18575161)
[»] chr5 (1 HSPs)
chr5 (190-228)||(12633083-12633121)
[»] chr1 (2 HSPs)
chr1 (179-228)||(20087545-20087595)
chr1 (190-228)||(45291705-45291743)
[»] chr8 (1 HSPs)
chr8 (179-214)||(14935669-14935704)
[»] chr2 (1 HSPs)
chr2 (190-228)||(23362923-23362961)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 23 - 276
Target Start/End: Complemental strand, 31954324 - 31954065
Alignment:
Q  23 cattccttaatactcaaattggcaccacaaagtacataaaacaacgattttatcccatacttaactaattgcttaaacatcaagacaccaaaacgctaaa 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31954324 cattccttaatactcaaattggcaccacaaagtacataaaacaacgattacatcccatacttaactaattacttaaacatcaagacaccaaaacgctaaa 31954225  T
Q  123 tagtagtacaacactcacaatgaaaagagtacatctcaaactcataatagaaacacatcttaatcttatct------taataatatacaaatgtgaagcc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||      |||||||||||||||||||||||    
T  31954224 tagtagtacaacactcacaatgaaaagagtacatctcaaactcttaatagaaacacatcttaatcttatcttaatcttaataatatacaaatgtgaagcc 31954125  T
Q  217 acaaataggaaannnnnnngcaccagtccaatatgtcaaaattctaagtcacttgatgtc 276  Q
    ||||||||||||       |||||||||||||||||||||||||||| ||||||||||||    
T  31954124 acaaataggaaatttttttgcaccagtccaatatgtcaaaattctaaatcacttgatgtc 31954065  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 1062127 - 1062079
Alignment:
Q  177 acatcttaatctta-tcttaataatatacaaatgtgaagccacaaatag 224  Q
    |||||||||||||| ||||||||||||||||||| ||||  ||||||||    
T  1062127 acatcttaatcttaatcttaataatatacaaatgggaagaaacaaatag 1062079  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 25571864 - 25571908
Alignment:
Q  184 aatcttatcttaataatatacaaatgtgaagccacaaataggaaa 228  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  25571864 aatcttatcttaataatatacaaatgtgaagctacaaataggaaa 25571908  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 26006332 - 26006376
Alignment:
Q  184 aatcttatcttaataatatacaaatgtgaagccacaaataggaaa 228  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  26006332 aatcttatcttaataatatacaaatgtgaagctacaaataggaaa 26006376  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 26125103 - 26125141
Alignment:
Q  190 atcttaataatatacaaatgtgaagccacaaataggaaa 228  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  26125103 atcttaataatatacaaatgtgaagctacaaataggaaa 26125141  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 18575111 - 18575161
Alignment:
Q  179 atcttaatctta-tcttaataatatacaaatgtgaagccacaaataggaaa 228  Q
    |||||||||||| ||||||||||||||||||||| | | ||||||||||||    
T  18575111 atcttaatcttaatcttaataatatacaaatgtggatctacaaataggaaa 18575161  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 12633121 - 12633083
Alignment:
Q  190 atcttaataatatacaaatgtgaagccacaaataggaaa 228  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  12633121 atcttaataatatacaaatgtgaagacacaaataggaaa 12633083  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 20087545 - 20087595
Alignment:
Q  179 atcttaatctta-tcttaataatatacaaatgtgaagccacaaataggaaa 228  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  20087545 atcttaatcttaatcttaataatatacaaatgtgaagaaacaaataggaaa 20087595  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 45291743 - 45291705
Alignment:
Q  190 atcttaataatatacaaatgtgaagccacaaataggaaa 228  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  45291743 atcttaataatatacaaatgtgaagacacaaataggaaa 45291705  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 14935669 - 14935704
Alignment:
Q  179 atcttaatcttatcttaataatatacaaatgtgaag 214  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14935669 atcttaatcttatcttaataatatacaaatgggaag 14935704  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 23362923 - 23362961
Alignment:
Q  190 atcttaataatatacaaatgtgaagccacaaataggaaa 228  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  23362923 atcttaataatatacaaatgtaaagacacaaataggaaa 23362961  T

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