View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_182 (Length: 291)
Name: NF9839A_low_182
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_182 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 49165671 - 49165389
Alignment:
| Q |
1 |
tggatgtgaattgattggcttctttcttagcttcagaatttttgaaggagcatggcctagtctgcagtgagtttctttgagtttccttcgttcctgaggt |
100 |
Q |
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| T |
49165671 |
tggatgtgaattgattggcttctttcttagcttcagaatttttgaaggagcatggcctagcctgcagtgagtttctttgagtttccttcgttcctgaggt |
49165572 |
T |
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| Q |
101 |
atgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatagttgcannnnnnnnncttgattctagtgttgtcaatcg |
200 |
Q |
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| T |
49165571 |
atgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatagttgca--tttttttcttgattctagtgttgtcaatcg |
49165474 |
T |
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| Q |
201 |
tgagtcatnnnnnnntaggggattattcaagctgcattgtagtgccactaaacaacattttgtattaaatagtgtatggtagaac |
285 |
Q |
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| T |
49165473 |
tgagtcataaaaaaatagaggattattcaagctgcattgtagtgccactaaacaacattttgtattaaatagtgtatggtagaac |
49165389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 43752076 - 43751932
Alignment:
| Q |
1 |
tggatgtgaattgattggcttctttcttagcttcagaatttttgaaggagcatggcctagtctgcagtgagtttctttgagtttccttcgttcctgaggt |
100 |
Q |
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|||||| |||||||| | |||||||||| |||||||| ||||||| ||||||| |||| || ||||| ||| |||||| ||||| ||||| || |
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| T |
43752076 |
tggatgcgaattgatctgattctttcttaacttcagaacttttgaaagagcatgaactagcatggagtgaattt---tgagttgccttctttcctatagt |
43751980 |
T |
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| Q |
101 |
atgccaacaaaagtatataatcaatttacaaataagctatgtctattt |
148 |
Q |
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||||||||||||| | | || |||||||||||||||||| ||||||| |
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| T |
43751979 |
atgccaacaaaagcaaaaaaacaatttacaaataagctacatctattt |
43751932 |
T |
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