View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_186 (Length: 289)
Name: NF9839A_low_186
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_186 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 4 - 277
Target Start/End: Original strand, 482311 - 482583
Alignment:
| Q |
4 |
gaagcatactctattattaccttggttcaggcttctttgaagaaggaactgcagcatctatcccaacacaacgtaaatgttttgccaagccttcaacctg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
482311 |
gaagcatactctattattaccttggttcaggcttctttgaagaaggaactgcagcatctatcccaacacaacgtaaatgttttgccaagccttcaacctg |
482410 |
T |
|
| Q |
104 |
agtaaattccttaccagattcatgctcatatttaaattttataaatacacaatcattcaaattgttcattaaaataaaatcccctttctttttggataac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
482411 |
agtaaattccttaccagattcatgctcatatttaaattttataaatacacaatcattcaaattgttcattaaaataaaatcccctttctttttggat-at |
482509 |
T |
|
| Q |
204 |
atgtttcaattatatattcatacaacagaagtcaaaatattgacactgataacgatgcaaatggctcatatatt |
277 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
482510 |
atgtttcaattatatattcataaaacagaagtcaaaatattgacactgataacgatgcaaatggctcatatatt |
482583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University