View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_189 (Length: 288)
Name: NF9839A_low_189
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_189 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 23344178 - 23343906
Alignment:
| Q |
1 |
tcaaatttgtgactaagtcacacaaagaattaacaaaatggcttcaccatcaagcattcttgtaatcttatcatgtccactatattcccatcctacgatc |
100 |
Q |
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| T |
23344178 |
tcaaatttgtgactaagtcgcagaaagaattaacaaaatggcttcaccatcaagcattcttgtaatcttatcatgtccactatattcccatcctacgatc |
23344079 |
T |
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| Q |
101 |
gattcggtcatcctttttccttctaccataaattaaactcatcttcctgtctagaatcaaataaaatggttgatattagcttcaaaaagttaatcatttt |
200 |
Q |
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| T |
23344078 |
gattcgatcatcctttttccttctaccataaattaaactcatcttcctgtctagaatcaaataaaatggttgatattagcttcaaaaagttaatcatttt |
23343979 |
T |
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| Q |
201 |
gttctttttatcttccagcttgagaacaaccacttcagttgacactttatctatgaatcaatctatccatgat |
273 |
Q |
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| T |
23343978 |
gttctttttatcttccagcttgagaacaaccacttcacttgacactttatctctgaatcaatctatccatgat |
23343906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 23383198 - 23383334
Alignment:
| Q |
134 |
taaactcatcttcctgtctagaatcaaataaaatggttgatattagcttcaaaaagttaatcattttgttctttttatcttccagcttgagaacaaccac |
233 |
Q |
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| T |
23383198 |
taaactcatcttcctgtctagaatcaaataaaatggttgatattagcttcaaaaagttaatcattttgttctttttatcttccagcttgagaacaaccac |
23383297 |
T |
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| Q |
234 |
ttcagttgacactttatctatgaatcaatctatccat |
270 |
Q |
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| T |
23383298 |
ttcacttgacactttatctctgaatcaatctatccat |
23383334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 23383118 - 23383196
Alignment:
| Q |
1 |
tcaaatttgtgactaagtcacacaaagaattaacaaaatggcttcaccatcaagcattcttgtaatcttatcatgtcca |
79 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
23383118 |
tcaaatttgtgactaagtcgcacaaagaattaacaaaatggcttcaccatgaagcattcttgtactcttatcatgtcca |
23383196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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