View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_19 (Length: 449)
Name: NF9839A_low_19
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Original strand, 31777791 - 31778205
Alignment:
| Q |
17 |
atcactgccctggcgccgttcagtttctttttaaagtgaatgaaactgtatcccctaggtatgttcatactggtgattttaggtttaatcgtgaaatgtt |
116 |
Q |
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| T |
31777791 |
atcactgccctggcgccgttcagtttctttttaaagtgaatgaaactgaatcccctaggtatgttcatactggtgattttaggtttaatcgtgaaatgtt |
31777890 |
T |
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| Q |
117 |
gttggatttgaatcttggtgaatttattggtgcggatgctgtgtttttggatacgacttattgtcatcccaaatttgtttttccgactcaaaatgaatcg |
216 |
Q |
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| T |
31777891 |
gttggatttgaatcttggtgaatttattggtgcggatgctgtgtttttggatacgacttattgtcatcccaaatttgtttttccgactcaaaatgaatcg |
31777990 |
T |
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| Q |
217 |
gttgattatatcgttgatgtcgtaaaggaatgtgatggtgagaatgttttgtttcttgttgctgcttatgttgttggtaaggagaagattttgcttgaga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31777991 |
gttgattatatcgttgatgtcgtaaaggaatgtgatggtgagaatgttttgtttcttgttgctacttatgttgttggtaaggagaagattttgcttgaga |
31778090 |
T |
|
| Q |
317 |
ttgcacggaggtgtgggaagaaagtgtgtgtggatggaaaaaagatggaggttttgcgggctcttgggtatggtgagagtggtgagtttaccgaggatag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31778091 |
ttgcacggaggtgtgggaagaaagtgtgtgtggatggaaaaaagatggaggttttgcgggctcttgggtatggtgagagtggtgagtttaccgaggatag |
31778190 |
T |
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| Q |
417 |
gttggagagtgatgt |
431 |
Q |
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|||||||||| |||| |
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| T |
31778191 |
gttggagagtaatgt |
31778205 |
T |
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