View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_193 (Length: 287)
Name: NF9839A_low_193
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_193 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 9098738 - 9099011
Alignment:
| Q |
1 |
tcatgttggattttgttctttatacaataattattaactaaatatttctagctcnnnnnnnnnngtcgactctagaaatttaatgtgaaagaatataatg |
100 |
Q |
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| T |
9098738 |
tcatgttggattttgttctttatacaataattattaactaaatatttctagctcctttttttt-gtcgactctagaaatttaatgtgaaagaatataatg |
9098836 |
T |
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| Q |
101 |
cttgaatttggtattgacactacttaattgtcagaaatacaagagtgaggggcacgatacaattattttggctggtgcagaatatgggagtggaagctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9098837 |
cttgaatttggtattgacactacttaattgtcagaaatacaagagtgaggggcacgatacaattattttggctggtgcagaatatgggagtggaagctct |
9098936 |
T |
|
| Q |
201 |
cgcgattgggcagcaaagggaccaatgctactggtaattccttgatgctgttctgctctgactaatgtttatatt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9098937 |
cgcgattgggcagcaaagggaccaatgctactggtaattccttgatgctgttctgctctgactaatgtgtatatt |
9099011 |
T |
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