View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_198 (Length: 284)
Name: NF9839A_low_198
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_198 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 46 - 279
Target Start/End: Complemental strand, 44078684 - 44078449
Alignment:
| Q |
46 |
cagaccgtacattagttcaaactattctttttacacatggttcaaatcaaatttgnnnnnnnnnnt--tgtaaataacataatgaaaataaaacataaag |
143 |
Q |
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| T |
44078684 |
cagaccgtacattagttcaaactattctttttacacatggttcaaatcaaatttgaaaaaaaaaatattgtaaataacataatgaaaataaaacataaag |
44078585 |
T |
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| Q |
144 |
ttgtgatgggattatacttcaataacttctaattcaatggttcataatgatcaactatatactttctaatattcagatataactcccctatccctcataa |
243 |
Q |
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| T |
44078584 |
ttgtgatgggattatacttcaataacttctaattcaatggttcaaaatgatcaatcgtatactttctaatattcagatataactcccctatccctcataa |
44078485 |
T |
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| Q |
244 |
tacgttgacatatctacctaacaatacaataaattt |
279 |
Q |
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|||||||||||||||||||||||| |||| |||||| |
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| T |
44078484 |
tacgttgacatatctacctaacaacacaacaaattt |
44078449 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 6269271 - 6269357
Alignment:
| Q |
140 |
aaagttgtgatgggattatacttcaataacttctaattcaatggttcataatgatcaactatatactttctaatattcagatataact |
227 |
Q |
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|||||||||||||||||| |||| |||| | || ||||||||||| ||| ||||| | | |||||||||||| ||||| |||||||| |
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| T |
6269271 |
aaagttgtgatgggattagactttgataattcctcattcaatggtttatattgatcgattgtatactttctaagattca-atataact |
6269357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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