View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_2 (Length: 630)
Name: NF9839A_low_2
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 585; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 21 - 617
Target Start/End: Original strand, 4178690 - 4179286
Alignment:
| Q |
21 |
tcagtaggaaatgcaacgaaaagcatgctgcaaaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaa |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178690 |
tcagtaggaaatgcaacgaaaagcatgctgcaaaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaa |
4178789 |
T |
|
| Q |
121 |
agcaattcaccacattctgatcaaacaatgcaattgctgcaaacaccagaattgacatcattgcatgcatgaaatctataaactttatgcgatattttgc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4178790 |
agcaattcaccacattctgatcaaacaatgcaattgctgcaaacaccagaattgacatcatcgcatgcatgaaatctataaactttatgcgatattttgc |
4178889 |
T |
|
| Q |
221 |
agcaacttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtggcaaacccataacaaatattccccttgctgtctcttatgcta |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178890 |
agcaacttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtggcaaacccataacaaatattccccttgctgtctcttatgcta |
4178989 |
T |
|
| Q |
321 |
tctgtaaagtttagcaggaagcatgatgcaccacatagagtcacaagtacagaagtcatggacttgctgacagagtcacagttgccaacatttgtaaaaa |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4178990 |
tctgtaaagtttagcaggaagcatgatgcaccacatagagtcacaagtacagaagtcatggacttgcagacagagtcacagttgccaacatttgtaaaaa |
4179089 |
T |
|
| Q |
421 |
ttggtgacaaaagttggaaagccagaacagtgcctgtaggtagaaggtttgccaaatgcgccgtgctttgaaatgtcgaacttatagctttctgtatcag |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4179090 |
ttggtgacaaaagttggaaagccagaacagtgcctgtaggtagaaggtttgccaaatgcgccgtgctttgaaatgtcgaacttatagctttctgtaccag |
4179189 |
T |
|
| Q |
521 |
gctcctctctgcttctggaacctccgcattccgcaggagtggaaccttttgttcatcgttcttagaatcatcatcgatttctaaattgatgtccatc |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4179190 |
gctcctctctgcttctggaacctccgcattccgcaggagtggaaccttttgttcatcgttcttagaatcatcatcgatttctaaattgatgtccatc |
4179286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 24 - 594
Target Start/End: Original strand, 4167766 - 4168339
Alignment:
| Q |
24 |
gtaggaaatgcaacgaaaagcatgctgcaaaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagc |
123 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4167766 |
gtaggaaatgtaacgaaaagcatgctgcaaaaatcgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagc |
4167865 |
T |
|
| Q |
124 |
aattcaccacattctgatcaaacaatgcaattgctgcaaacaccagaattgacatcattgcatgcatgaaatctataaactttatgcgatattttgcagc |
223 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||| ||||| ||||| |
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| T |
4167866 |
aattcaccacattccgatcaaacaatgcaattgctgcaaacaccagaattgacattactgcatgcataaaatctataaaccgtatgcggtatttagcagc |
4167965 |
T |
|
| Q |
224 |
aacttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtggcaaacccataacaaatattccccttgctgtctcttatgctatct |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||| | |||||| |
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| T |
4167966 |
aacttgaggtggaagtttggttgatccatcaataacccacaagcccttaaaggtggcaaacccataaataatattacccttgctgtctctaaagctatca |
4168065 |
T |
|
| Q |
324 |
gtaaagtttagcaggaagcatgatgcaccacatagagtcacaagtacagaagtcatggacttgctgacagagtcacagttgccaacatttgtaaaaattg |
423 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| |||||||||||| ||| |||||| |||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
4168066 |
gtaaagcttagcagaaagcatgatgcaccacagagagtcacaagtgcagcagtcatccacttgctgacagagtcacagctgccaatatttgtaaagattg |
4168165 |
T |
|
| Q |
424 |
gtgacaaaagttggaaagccagaacagtgcctgtaggtagaaggtttgccaaatgcgccgtgctttgaaatgtcgaacttatagctttctgtatcaggct |
523 |
Q |
| |
|
|||| |||||||| || || || |||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||||||||||| | ||||||| | | |
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| T |
4168166 |
gtgataaaagttgtaatgcaaggacagtgcctgtaggtagaaggtttgctaaatgtgccgtgctctgaaatgtcaaacttatagctgtttgtatcaagtt |
4168265 |
T |
|
| Q |
524 |
cctctctgcttctggaacctccgcattccgcaggagtggaaccttttgttcatc---gttcttagaatcatcat |
594 |
Q |
| |
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|||| ||||||||||||||| ||||| |||| ||||||||||| |||||||| ||||||||||||||||| |
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| T |
4168266 |
tctctttgcttctggaacctctgcatttagcagtagtggaaccttgtgttcatccttgttcttagaatcatcat |
4168339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 23 - 358
Target Start/End: Complemental strand, 34944705 - 34944370
Alignment:
| Q |
23 |
agtaggaaatgcaacgaaaagcatgctgcaaaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaag |
122 |
Q |
| |
|
||||||||||||||| || |||||||| || ||||| |||||| | |||||||| || || ||||||| | ||||| | ||| ||| |||||| || |
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| T |
34944705 |
agtaggaaatgcaacaaacagcatgctacagaaaacaccaattccaacaggcaatgcagtaaggatttgacgcatctcatatgaaggtgatggaaagaaa |
34944606 |
T |
|
| Q |
123 |
caattcaccacattctgatcaaacaatgcaattgctgcaaacaccagaattgacatcattgcatgcatgaaatctataaactttatgcgatattttgcag |
222 |
Q |
| |
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|| || |||||||| |||||||||| |||||| |||| ||| |||| ||||||||| ||||||||||||||||| || ||| ||| ||||||||||| |
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| T |
34944605 |
cagttaaccacattatgatcaaacattgcaatagctgaaaaaaccaaaattgacataattgcatgcatgaaatcaatgaaccttagttgatattttgcat |
34944506 |
T |
|
| Q |
223 |
caacttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtggcaaacccataacaaatattccccttgctgtctcttatgctatc |
322 |
Q |
| |
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||| || | |||||||| | | |||||||||||| | ||| ||||| || || |||||||| |||||||| || ||||| || ||||| | | |||||| |
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| T |
34944505 |
caagttcatgtggaagtgtagctgatccatcaatgatccataagcctttaaatgtggcaaatccataacatatgttccctttattgtctttgaagctatc |
34944406 |
T |
|
| Q |
323 |
tgtaaagtttagcaggaagcatgatgcaccacatag |
358 |
Q |
| |
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|| ||| ||| ||||||||||| ||||||||||| |
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|
| T |
34944405 |
agtgaagcatagtaggaagcatgaggcaccacatag |
34944370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 34947880 - 34947771
Alignment:
| Q |
180 |
attgcatgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtgg |
279 |
Q |
| |
|
||||||||||||||||| || ||| ||| ||||||||||| ||| || | |||||||| | | |||||||||||| | ||| ||||| || || |||| |
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| T |
34947880 |
attgcatgcatgaaatcaatcaaccttagttgatattttgcatcaagttcatgtggaagtgtagctgatccatcaatgatccataagcctttaaatgtgg |
34947781 |
T |
|
| Q |
280 |
caaacccata |
289 |
Q |
| |
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|||| ||||| |
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|
| T |
34947780 |
caaatccata |
34947771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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