View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_200 (Length: 282)
Name: NF9839A_low_200
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_200 |
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Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 29442590 - 29442464
Alignment:
| Q |
1 |
agagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggt-------ttagggtttttcctttctt |
93 |
Q |
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| T |
29442590 |
agagaggattccggtaagtatctccggcggaagatccaccattggaaggaagg----aaggttctagttagggtttaggccttagggtttttcctttctt |
29442495 |
T |
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| Q |
94 |
cctctccatgtacgacccaaatgcaacacag |
124 |
Q |
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| T |
29442494 |
cctctccttgtacgacccaaatgcaacacag |
29442464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 29442391 - 29442311
Alignment:
| Q |
196 |
cttgattacgtgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt |
276 |
Q |
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| T |
29442391 |
cttgattacatgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt |
29442311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 29424132 - 29424226
Alignment:
| Q |
1 |
agagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttcttcct |
96 |
Q |
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| T |
29424132 |
agagaggattccggtgagtatctccggcggaagatccgtcattgg-agcttggaagttaggttctagctagggtttagagtttttcatttcttcct |
29424226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29452582 - 29452537
Alignment:
| Q |
1 |
agagaggattccggtaagtatctccggcggaagatccgccattgga |
46 |
Q |
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| T |
29452582 |
agagaggataccggtaagtatctccggcggaagatccgccattgga |
29452537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 29452503 - 29452466
Alignment:
| Q |
44 |
ggaaggaaggaaggaaggttctagttagggtttagggt |
81 |
Q |
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| T |
29452503 |
ggaaggaaggaaggaaggttgtagctagggtttagggt |
29452466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 10354101 - 10354157
Alignment:
| Q |
36 |
ccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttctt |
93 |
Q |
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| T |
10354101 |
ccgccattgtaaggaaggaatgaaggttct-gctagggtttagggtttttcatttctt |
10354157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 9283404 - 9283343
Alignment:
| Q |
2 |
gagaggattccggtaagtatctccggcggaagatc---cgccattggaaggaaggaaggaag |
60 |
Q |
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| T |
9283404 |
gagaagatttcggcaagtatgtccggcggaagatcggacgccattggaaggaaggaaggaag |
9283343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 10336751 - 10336785
Alignment:
| Q |
23 |
tccggcggaagatccgccattggaaggaaggaagg |
57 |
Q |
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| T |
10336751 |
tccggcggaagatccgccattgtaaggaaggaagg |
10336785 |
T |
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