View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9839A_low_201 (Length: 282)
Name: NF9839A_low_201
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_201 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 47720049 - 47719777
Alignment:
| Q |
1 |
tcaaaacataaaataaatccccctcaacaaaaacaacggctgcctctaaactataggaaacaaagtagccataatnnnnnnntaaacaacatcatcatag |
100 |
Q |
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| T |
47720049 |
tcaaaacataaaataaatccccctcaacaaaaacaacggctgcctctaaactacaggaaacaaagtagccataataaaaaaataaacaacatcatcatag |
47719950 |
T |
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| Q |
101 |
gtactacaggaggctacaacaacagcaaaaccccaaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaataatcaataacaaatgtatcc |
200 |
Q |
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| T |
47719949 |
gtactacaggaggctacaacaacagcaaaaccccaaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaataatcaataacaaatgtatcc |
47719850 |
T |
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| Q |
201 |
gtttcactgactcatccaccaaagaatatcaaaaataaaataacacaattattcgtctaaggtgcatattgtt |
273 |
Q |
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| T |
47719849 |
gtttcactgactcatccaccaaagaatatcaaaaataaaataactcaattattcgtctaaggtgcattttgtt |
47719777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 47727041 - 47726786
Alignment:
| Q |
1 |
tcaaaacataaaataaatccccctcaacaaaaacaacggctgcctctaaactataggaaacaaagtagccataatnnnnnnntaaacaacatcatcatag |
100 |
Q |
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| T |
47727041 |
tcaaaacataaaataaatccccctcaacaaaaacaacggctgcctctaaactacaggaaacaaagtagccataataaaaaaataaacaacatcatcatag |
47726942 |
T |
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| Q |
101 |
gtactacaggaggctacaacaacagcaaaaccccaaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaataatcaataacaaatgtatcc |
200 |
Q |
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| T |
47726941 |
gtactacaggaggctacaacaacagcaaaaccccaaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaataatcaataacaaatgtatcc |
47726842 |
T |
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| Q |
201 |
gtttcactgactcatccaccaaagaatatcaaaaataaaataacacaattattcgt |
256 |
Q |
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| T |
47726841 |
gtttcactgactcatccaccaaagaatatcaaaaataaaataactcaattattcgt |
47726786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 129 - 256
Target Start/End: Complemental strand, 47748219 - 47748092
Alignment:
| Q |
129 |
aaccccaaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaataatcaataacaaatgtatccgtttcactgactcatccaccaaagaata |
228 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47748219 |
aacccctaaaaggcaagacgcccaaattgaccaggaaagaatcaaaacaaataatcaataacaaatgtatccgtttcactgactcatccaccaaagaata |
47748120 |
T |
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| Q |
229 |
tcaaaaataaaataacacaattattcgt |
256 |
Q |
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| T |
47748119 |
tcaaaaataaaataactcaattattcgt |
47748092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 47748250 - 47748221
Alignment:
| Q |
24 |
tcaacaaaaacaacggctgcctctaaacta |
53 |
Q |
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| T |
47748250 |
tcaacaaaaacaacggctgcctctaaacta |
47748221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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