View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9839A_low_203 (Length: 281)

Name: NF9839A_low_203
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9839A_low_203
NF9839A_low_203
[»] chr7 (2 HSPs)
chr7 (170-248)||(33855856-33855934)
chr7 (104-148)||(33855427-33855471)
[»] chr6 (4 HSPs)
chr6 (104-148)||(26098288-26098332)
chr6 (170-248)||(26098919-26098997)
chr6 (104-148)||(25998763-25998807)
chr6 (170-227)||(25999188-25999245)


Alignment Details
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 33855856 - 33855934
Alignment:
Q  170 catgttggtcttttttgccttattggtggaaaaagaagaagcaaggattgggaaacttctagaaactttctctttggtt 248  Q
    ||||||||||||| ||  |||||||||||| ||  |||||||||||||||| |||||| ||||||||||| ||||||||    
T  33855856 catgttggtctttcttatcttattggtggagaagaaagaagcaaggattggaaaacttgtagaaactttccctttggtt 33855934  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 33855427 - 33855471
Alignment:
Q  104 acaggctatttatatgttaatagttgtgtgtttattaaggcaacc 148  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  33855427 acaggctatttatatgttaatagttgtgtatttattaaggcaacc 33855471  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 26098288 - 26098332
Alignment:
Q  104 acaggctatttatatgttaatagttgtgtgtttattaaggcaacc 148  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  26098288 acaggctatttatatgttaatagttgtgtatttattaaggcaacc 26098332  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 248
Target Start/End: Original strand, 26098919 - 26098997
Alignment:
Q  170 catgttggtcttttttgccttattggtggaaaaagaagaagcaaggattgggaaacttctagaaactttctctttggtt 248  Q
    ||||||||||||| ||  |||||||||||| ||  |||||||||||||| | |||||| ||||||||||| ||||||||    
T  26098919 catgttggtctttcttatcttattggtggagaagaaagaagcaaggatttgaaaacttgtagaaactttccctttggtt 26098997  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 25998763 - 25998807
Alignment:
Q  104 acaggctatttatatgttaatagttgtgtgtttattaaggcaacc 148  Q
    |||||||||||||||||||||| |||||| |||||||||||||||    
T  25998763 acaggctatttatatgttaatacttgtgtatttattaaggcaacc 25998807  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 25999188 - 25999245
Alignment:
Q  170 catgttggtcttttttgccttattggtggaaaaagaagaagcaaggattgggaaactt 227  Q
    ||||||||||||| ||  |||||||||||| ||  |||||||||||||||| ||||||    
T  25999188 catgttggtctttcttatcttattggtggagaagaaagaagcaaggattggaaaactt 25999245  T

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