View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9839A_low_205 (Length: 279)
Name: NF9839A_low_205
Description: NF9839A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9839A_low_205 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 13704473 - 13704215
Alignment:
| Q |
20 |
tcttctgtatcaacaaactcagtaaaatttgcattttcactttcccaattgggacattcattctaataatacccttgtttgtcacatttgtagcattcag |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13704473 |
tcttctgtatcaccaaactcagtaaaatttgcattttcaatttcccaattgggacattcattctaataatacccttgtttgtcacgtttgtagcattcag |
13704374 |
T |
|
| Q |
120 |
ccacttcacttgcctgttttattcttcacgacttctagcaccaataagtcctcttccacacccataactctttctatattcgggcttattcaaagttggt |
219 |
Q |
| |
|
||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| || |||||||||||||| | |||| |||||||||||||| |
|
|
| T |
13704373 |
ccagttcacttgcctgttttactcttcacgtcttctagcaccaataagtcctattccacgcctgtaactctttctatagttgggcatattcaaagttggt |
13704274 |
T |
|
| Q |
220 |
tcatcatctttctctttattaaatttctttcttgattctttgaaaagcaagcttctttg |
278 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| ||||||| | ||||||||||||| |
|
|
| T |
13704273 |
tcatcatctttctctttatcaaattttgttcttcattctttatcatgcaagcttctttg |
13704215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 24658787 - 24658830
Alignment:
| Q |
43 |
aaaatttgcattttcactttcccaattgggacattcattctaat |
86 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
24658787 |
aaaatttgcattttcactttcccgaatgggacattcattctaat |
24658830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 2610036 - 2610076
Alignment:
| Q |
43 |
aaaatttgcattttcactttcccaattgggacattcattct |
83 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
2610036 |
aaaatttgcatttttactttcccgattgggacattcattct |
2610076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University